Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H15
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q15003 Cluster: Condensin complex subunit 2; n=25; Amni...    35   2.0  
UniRef50_Q8IJM3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q15003 Cluster: Condensin complex subunit 2; n=25;
           Amniota|Rep: Condensin complex subunit 2 - Homo sapiens
           (Human)
          Length = 741

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -2

Query: 590 Q*WREKCNDTDYTYNIDYPTQHTAPPKTKFLRNTVNHSKIVSFHXDKLQEFNQTN 426
           Q WR     TD+ YN+D   Q    P T+ L+    H ++ + H +++++++  N
Sbjct: 501 QNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGH-RVETEHYEEIEDYDYNN 554


>UniRef50_Q8IJM3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 971

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 466 VFIXISSKSLTKQITRIYNIKHKSDFKIHIRKYKTTYNK*VNFMN 332
           +F    +K  T +    YN+K+K+ + I   +Y+ TY+  VN+MN
Sbjct: 427 MFNSSKNKYTTNEYEEYYNVKNKNIYAIDYHQYEDTYDM-VNYMN 470


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,805,922
Number of Sequences: 1657284
Number of extensions: 8194242
Number of successful extensions: 16632
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16626
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)