Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H15
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   1.8  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.1  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   5.5  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   9.5  

>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 578 EKCNDTDYTYNIDYPTQHTAPPKTKFL 498
           EKCN  D      +  +H+APP++K +
Sbjct: 418 EKCNGLDLLPERSHKHRHSAPPRSKLI 444


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 424 TRIYNIK-HKSDFKIHIRKYKTTYN 353
           +R Y IK H  D K+H +KY+ T N
Sbjct: 5   SRKYKIKKHPKDCKLHAKKYRGTLN 29


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 407 DIVNSSNLFG*TLGAYXNENLQFCYDLLCFSK 502
           D+ N SN F    G   +   Q C  LLC SK
Sbjct: 153 DVQNISNFFDQNFGIRRSNIYQLCLLLLCISK 184


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -1

Query: 432 NKLLEFTISNINQILKYISESTKQPIINR*IL 337
           NKLL+FT+S++N ++  +S + ++  + R +L
Sbjct: 132 NKLLKFTMSDVNHVI-CVSHTCRENTVLRAVL 162


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 TKLNLXKSINIFNTNS*QLIG 242
           TKLN+ +S N +NT+S   +G
Sbjct: 555 TKLNIDESTNYYNTDSIDKVG 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,740
Number of Sequences: 5004
Number of extensions: 38493
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)