Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H15
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57836| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_57836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 226 LFVLNIFIDLXKFNLVKNKTIKFIK*PNFKLNESYSLSW 110
           L  L  FI L K  L  NK+++F+   +F  N++   SW
Sbjct: 324 LISLGYFIGLKKSTLAPNKSVRFLGIDSFIDNQALQFSW 362


>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
 Frame = +2

Query: 425 NLFG*TLGAYXNENLQFCYDLLCFSKTSFLGGRYVELGNLCYXYNLCHCIFPS------- 583
           NLF   +GA    +L    +L CFS  S + G++   G  C  + LC  +  S       
Sbjct: 604 NLF---VGALAVSDLLLIVNLACFSSPSVVLGKWPFSGFFCQFHGLCIALLASASLLLMA 660

Query: 584 ITAAN-FIQIV 613
           +TA N ++Q+V
Sbjct: 661 VTAVNRYLQVV 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,006,718
Number of Sequences: 59808
Number of extensions: 243138
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)