Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    66   3e-12
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    49   7e-07
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    29   0.77 
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   9.5  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.5  

>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 30/67 (44%), Positives = 46/67 (68%)
 Frame = +1

Query: 436 GAVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLITFLLVTHGQLVLFFL 615
           GA + L I+ +I  SDLE DY+N  + C+KLN  ++P+ I+HTL+T LL+   + +LF  
Sbjct: 21  GANMLLQIFCVIMFSDLEMDYINPIDLCNKLNDLVMPEIISHTLVTLLLLLGKKWLLFLA 80

Query: 616 NLPLFIW 636
           NLPL ++
Sbjct: 81  NLPLLVF 87


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 22/76 (28%), Positives = 42/76 (55%)
 Frame = +1

Query: 409 LFSLCLIDTGAVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLITFLLVT 588
           ++   L+ T A + L +Y+ +  SDL+ D++N  +   KLN++++P+         LL+ 
Sbjct: 6   IYFTSLMLTCANIMLQMYFTVMYSDLKDDFINPIDLSRKLNWYVLPEMGFQAFSALLLLL 65

Query: 589 HGQLVLFFLNLPLFIW 636
            G  + F LN+P+  W
Sbjct: 66  SGAWITFLLNVPMLAW 81


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 160 ELEYVCAIESMSRFGDYGYI-TPMNQWFLKL 249
           EL  VC  E  + + DYGYI TP   W ++L
Sbjct: 122 ELLKVCLDEMSASYIDYGYITTPQLHWLVRL 152


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 194 LMDSIAQTYSNSNYLPSLVDY--NNVGSRYG 108
           L+  I  TYS ++Y+P+ V +  N+ G  +G
Sbjct: 651 LLGFIQNTYSTTSYIPTRVSFNPNDTGGSFG 681


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 206 SPKRLMDSIAQTYSNSNYLPSLVDYNNVGSRYGIKSRVGRNVAISRYL 63
           S ++ + ++AQ +  SN +  L+       ++G +S  G+N + SRYL
Sbjct: 793 SMEQTIVNLAQNFVGSNNINLLMP----NGQFGTRSEGGKNASASRYL 836


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 538 TSNSVYHSILGHLGNHTLNQTMLLC---NKLIEIIQHQCQLNTER 413
           TS SV  S+LG + NH   + +L     +K+ + I H  +L  ++
Sbjct: 182 TSRSVLSSLLGEMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKK 226


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 173 TYSNSNYLPSLVDYNNVGSRYGIKSRVGRNVAI 75
           TYS++   P + DY   G  + ++S + R+  I
Sbjct: 487 TYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRI 519


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 384 RDDISRNSTFLSVFN 428
           +DD S+N+TFLS F+
Sbjct: 81  KDDASKNNTFLSTFD 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,461
Number of Sequences: 5004
Number of extensions: 52120
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)