Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H12
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                29   2.5  
SB_18292| Best HMM Match : UPF0041 (HMM E-Value=4.1)                   29   3.3  
SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                      29   4.3  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   7.6  

>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 346 VLLNRY*TNSYFCVMILAETVLFSLCLIDTGAVLFLLIYYIITLS 480
           VLL++Y  N Y+C  I A  +L+        A + L  YY  +++
Sbjct: 129 VLLHQYYCNQYYCTSITAPVLLYQYYCTSITAPVLLHQYYCTSIT 173



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 346 VLLNRY*TNSYFCVMILAETVLFSLCLIDTGAVLFLLIYYIITLS 480
           VLL++Y  N Y+C  I A  +L         A + L  YY  +++
Sbjct: 513 VLLHQYYCNQYYCTSITAPVLLHQYYCTSITAPVLLHQYYCTSIT 557


>SB_18292| Best HMM Match : UPF0041 (HMM E-Value=4.1)
          Length = 377

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 295 KITQNNNXXYSNTKILILETTDSLELCIHNHQ 200
           K  Q NN   +NT+I+I +    LE+CI ++Q
Sbjct: 39  KAQQRNNQNNTNTEIIIKQFVIKLEICIIDNQ 70


>SB_7586| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 362

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 403 TVLFSLCLIDTGAVLFLLIYY----IITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLI 570
           ++L    L+  G++L LL  +    ++ +  +  D L    C  +  +W+  + ++  ++
Sbjct: 31  SILIITTLLGNGSILLLLKRFRKINLLGMGMMMLDRLLVIRCGMRYKFWMTTEKVSVAVL 90

Query: 571 TFLLVTHGQLVLFFLNL 621
              LVT   +  +FLNL
Sbjct: 91  DMWLVTVAVITPWFLNL 107


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 382 CVMILAETVLFSLCLIDTGAVLFLLIYYIITLSDL-ECDYLNAQECCDKLNYWLVPKYIA 558
           C + +   VL+  C I   +VLF   Y  + LS L  C +        + N+WL    I 
Sbjct: 27  CFIGVVLLVLYRCCFIGVISVLFYRCYIDVVLSVLYRCCFTGVISVLYRGNFWLELHKIR 86

Query: 559 H 561
           H
Sbjct: 87  H 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,057,807
Number of Sequences: 59808
Number of extensions: 369473
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)