Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H12
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12180.1 68416.m01519 cornichon family protein contains Pfam ...    43   2e-04
At1g62880.1 68414.m07100 cornichon family protein contains Pfam ...    42   5e-04
At1g12390.1 68414.m01432 cornichon family protein contains Pfam ...    41   6e-04
At1g12340.1 68414.m01426 cornichon family protein contains Pfam ...    38   0.004
At4g12090.1 68417.m01921 cornichon family protein contains Pfam ...    36   0.031
At5g10580.1 68418.m01224 expressed protein contains Pfam profile...    29   2.7  
At5g41200.1 68418.m05007 MADS-box family protein contains simila...    28   4.7  
At3g56120.1 68416.m06237 Met-10+ like family protein non-consens...    28   6.2  
At1g52190.1 68414.m05889 proton-dependent oligopeptide transport...    27   8.2  
At1g44960.1 68414.m05153 expressed protein                             27   8.2  

>At3g12180.1 68416.m01519 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 146

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +1

Query: 439 AVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLITFLLVTHGQLVLFFLN 618
           A++  + Y +I L+DLE DYLN  E   ++N  ++P++I    +  L +     V F + 
Sbjct: 17  ALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFLLTWHWVFFLVA 76

Query: 619 LPLFIW 636
           +P+ ++
Sbjct: 77  VPVTVY 82


>At1g62880.1 68414.m07100 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 137

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = +1

Query: 442 VLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAH-TLITFLLVTHGQLVLFFLN 618
           +L L++Y +I+L+DLE DY+N  +   ++N+ ++P+ I    L  F LVT G   +  L 
Sbjct: 17  LLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT-GHWFMALLC 75

Query: 619 LPLFIWLTYEY 651
           +P   +  + Y
Sbjct: 76  VPYLYYNFHLY 86


>At1g12390.1 68414.m01432 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 137

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/71 (23%), Positives = 39/71 (54%)
 Frame = +1

Query: 439 AVLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLITFLLVTHGQLVLFFLN 618
           A++ +++Y ++ L+DLE DY+N  +   ++N  ++P++I   ++    +  G   +  L 
Sbjct: 16  ALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLC 75

Query: 619 LPLFIWLTYEY 651
           LP   +  + Y
Sbjct: 76  LPYLYYNFHLY 86


>At1g12340.1 68414.m01426 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 118

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = +1

Query: 457 IYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLITFLLVTHGQLVLFFLNLPLFIW 636
           I++++ L+DLE DY+N  +   ++N  ++P++I   ++    +  G   +  L LP   +
Sbjct: 14  IFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLPYLYY 73

Query: 637 LTYEY 651
             + Y
Sbjct: 74  NFHLY 78


>At4g12090.1 68417.m01921 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 135

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +1

Query: 442 VLFLLIYYIITLSDLECDYLNAQECCDKLNYWLVPKYIAHTLITFLLVTHGQLVLFFLNL 621
           ++ ++IY +  L+DLE D +N  +   ++N  ++P++    L+    +  G   +  L+L
Sbjct: 17  LIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYYILTGHWFMAVLSL 76

Query: 622 P 624
           P
Sbjct: 77  P 77


>At5g10580.1 68418.m01224 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 246

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 523 KLNYWLVPKYIAHTLI-TFLLVTHGQLVLFFLNLPLFIWL 639
           ++  ++ P+Y++  L   FLL T G   LF++ LPL +W+
Sbjct: 162 EIGSFVTPEYVSELLEKAFLLNTVGNR-LFYMGLPLMLWI 200


>At5g41200.1 68418.m05007 MADS-box family protein contains
           similarity to hypothetical proteins of [Arabidopsis
           thaliana]
          Length = 330

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 650 YSYVSHINKGKLRKNNTSCPCVTNKKVIKV*AIYFGTNQ 534
           Y    +++ G +  N    PCV+NK+ ++     FG NQ
Sbjct: 229 YDQNQNMSMGDITNNKFQDPCVSNKEAVQESVNNFGLNQ 267


>At3g56120.1 68416.m06237 Met-10+ like family protein non-consensus
           TT donor splice site at exon 4 ; contains Pfam profile
           PF02475: Met-10+ like-protein
          Length = 468

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -1

Query: 628 TRVN*GKTIQVAHVSPIRR*LKCEQYTLAPTSNSVYHSILGHLGNHTLNQTMLLCNKLIE 449
           +R+  G  + +  + PI     CE+  L   S SV ++ L  +    LNQ   L    +E
Sbjct: 27  SRILNGYMLNMPRIKPITEDPTCEKTRLVILSESVKNADLSEIPEEKLNQLKKLSE--LE 84

Query: 448 IIQHQCQL 425
           ++ H   L
Sbjct: 85  VVPHSVTL 92


>At1g52190.1 68414.m05889 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 607

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 502 NAQECCDKLNYWLVPKYIAHTLITFLLVTHGQLVLFFLNLP 624
           N+    D    WLVP+Y+ H L    L   GQ   F+   P
Sbjct: 451 NSNAVVDISAMWLVPQYVLHGLAE-ALTAIGQTEFFYTEFP 490


>At1g44960.1 68414.m05153 expressed protein
          Length = 261

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 508 QECCDKLNYWLVPKYIA-HTLITFLLVTH 591
           +E  D+L  W +P Y+A HT+   L + H
Sbjct: 37  KEWSDRLGIWAIPTYVAVHTITLALCLPH 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,168,241
Number of Sequences: 28952
Number of extensions: 245661
Number of successful extensions: 559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)