Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H05
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   265   2e-71
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     59   4e-09
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              47   1e-05
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.27 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.62 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   4.3  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  265 bits (649), Expect = 2e-71
 Identities = 133/184 (72%), Positives = 147/184 (79%)
 Frame = +3

Query: 99  EIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRC 278
           +IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRKDEQDRC
Sbjct: 7   QIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRC 66

Query: 279 ITIKSTAISMFFELEXKDLVFITNPDXREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 458
           ITIKSTAIS+++EL   D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTAALRVTD
Sbjct: 67  ITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTD 124

Query: 459 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXTFXRIVQ 638
           GAL           QTETVLRQAIAERIKP+LFMNKMDR            Y TF RIV+
Sbjct: 125 GALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVE 184

Query: 639 NVNV 650
           ++NV
Sbjct: 185 SINV 188


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 48.8 bits (111), Expect(2) = 3e-09
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +3

Query: 132  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 293
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993



 Score = 30.3 bits (65), Expect(2) = 3e-09
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 396  IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 572
            + + GHVDFS EV+ +L    G +           QT +    A    +  I  +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 43/153 (28%), Positives = 68/153 (44%)
 Frame = +3

Query: 117 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 296
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A ++               IK  
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51

Query: 297 AISMFFELEXKDLVFITNPDXREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 476
           A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  +   
Sbjct: 52  ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110

Query: 477 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 575
                   QTE ++       I  I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = +3

Query: 429 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 608
           +V+ A+R+ DGAL           QT  VLRQA  E I+P L +NK+DR           
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSE 152

Query: 609 XYXTFXRIVQNVN 647
            +    +I++ VN
Sbjct: 153 AFIHLQQILEQVN 165



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = +3

Query: 423 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXX 602
           + +V+ A+R+ DGAL           QT  VLRQA  E I+P L +NK+DR         
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSP 80

Query: 603 XXXYXTFXRIVQNVN 647
              +    +I++ V+
Sbjct: 81  SEAFIHLQQILEQVS 95


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 366 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 545
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R A+  ++ 
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130

Query: 546 PILFMNKMDR 575
            I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 141 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 242
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 114 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 209
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 141 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 242
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 387 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 566
           I  +D+PGH  F++      +VTD  +           QT+  +  A A  +  I  +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199

Query: 567 MDR 575
           +D+
Sbjct: 200 IDK 202


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 499 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSG 350
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCG 664


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 460 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 338
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 517  STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 377
            ST+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 499 THTPDTQSTTTRAPSVTRSAAVTSEEKST 413
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 506 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 414
           S Y+ + HT+N+H+ + + +T C+C ++  ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,946
Number of Sequences: 59808
Number of extensions: 360112
Number of successful extensions: 1152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)