Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H05
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    35   6e-04
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    35   8e-04
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    30   0.017
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.21 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 34/118 (28%), Positives = 55/118 (46%)
 Frame = +3

Query: 114 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 293
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F +    E  +  + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56

Query: 294 TAISMFFELEXKDLVFITNPDXREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 467
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 34/118 (28%), Positives = 55/118 (46%)
 Frame = +3

Query: 114 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 293
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F +    E  +  + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56

Query: 294 TAISMFFELEXKDLVFITNPDXREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 467
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETAK-YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +3

Query: 372 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPI 551
           E G  +  +D+PGH  F S       +TD  +           QT   +  A   ++  I
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPII 249

Query: 552 LFMNKMDR 575
           + +NK+D+
Sbjct: 250 VAINKIDK 257



 Score = 29.5 bits (63), Expect = 0.029
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 141 MSVIAHVDHGKSTLTDSL 194
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 84  ISRLXEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSL 194
           +S+L  +   +  ++   N+  I HV HGKST+  ++
Sbjct: 26  VSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAI 62


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 FLINLIDSPGHVDFSSEVTAALRVTDGAL 467
           + + +ID+PGH DF   +       D A+
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAV 40


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 381 FLINLIDSPGHVDFSSEVTAALRVTDGAL 467
           + + +ID+PGH DF   +       D A+
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAV 56


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 3   PFSKRTPLLAYGSW-FNXTKI 62
           PF ++T ++ +GSW FN  ++
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQV 179


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 3   PFSKRTPLLAYGSW 44
           PF ++T +L +GSW
Sbjct: 161 PFDEQTCVLKFGSW 174


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 521 TQYCFSLYTHTRHTVNNHKGSISDTECSCYFRREINVSR*VNQV 390
           T  C S Y  +RH   N   +  +  CS    RE    R  +Q+
Sbjct: 227 TSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQL 270


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 484 TQSTTTRAP-SVTRSAAVTSEEKSTC 410
           + STTT +P + T+S  V +   STC
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTC 349


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 3   PFSKRTPLLAYGSW 44
           PF ++T ++ +GSW
Sbjct: 157 PFDEQTCVMKFGSW 170


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 276 CITIKSTAISMFF 314
           C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,776
Number of Sequences: 438
Number of extensions: 3029
Number of successful extensions: 23
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)