Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H03
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    28   1.0  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   4.1  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    25   9.5  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   9.5  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   9.5  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +3

Query: 219 DVDDGNYNTQFKQTPCS---IPGCKHIADTL 302
           DV D  Y ++ + TPCS   +PGC    D L
Sbjct: 377 DVMDSQYGSKIEDTPCSLHNVPGCFSCFDRL 407


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 264 CSIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLHIQENH 410
           C+ P C   + T  ++   +  TH     +SC+ C +       L+ H+Q+ H
Sbjct: 28  CTYPDCPK-SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 261 PCSIPGCKHIADTLLDYENHYNATHR-YSCAQCKKVLPSPH 380
           PC+I     I + L+D  NH+NA +R YS  + K+V    H
Sbjct: 372 PCAII----IMECLVDAPNHHNAIYRKYSENRMKRVSAFAH 408


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 231 GNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATH 335
           G+   + ++  CS P C +    L D   H N+ H
Sbjct: 340 GHGYKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 423 QNTNRGSPVCAGLRNAAKAEPSCI--ERTSTCASR 325
           ++ N GS  C+   ++   +PSC   E+ S C+S+
Sbjct: 217 KSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSK 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,460
Number of Sequences: 5004
Number of extensions: 61779
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)