Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H03
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293... 31 0.80
02_02_0286 - 8589736-8590857 30 1.4
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 29 4.2
06_01_0099 + 824557-825532,826090-826245,826422-828064 28 5.6
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 7.4
08_02_1535 + 27682812-27683528 28 7.4
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 7.4
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 28 7.4
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 28 7.4
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 27 9.8
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 27 9.8
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 27 9.8
>11_04_0391 +
17127309-17127449,17127886-17127950,17129209-17129305,
17129729-17130193,17130505-17130528
Length = 263
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 264 CSIPGCKHIADTLLDYENHYNATHRYSCA 350
C I GC D L ++E+HY H SC+
Sbjct: 73 CPISGCGAHLDCLENFEDHYRTRHTASCS 101
>02_02_0286 - 8589736-8590857
Length = 373
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 252 KQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKK 362
K +PC P C I Y N+ A RY C +C++
Sbjct: 42 KSSPCC-PRCNSIKTKFCYYNNYSMAQPRYFCRECRR 77
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 180 FIHDKQPTRLGIYDVDDGNYN 242
F+H+KQ +LG+++ +G +N
Sbjct: 460 FVHEKQAAKLGLFETGEGYFN 480
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 222 VDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSP 377
+DD K P S+P C+++ L + N ++ HR + A LP P
Sbjct: 374 MDDEVSYAAHKSQPVSVPTCQYLCFDFLTHPNSFSPHHR-APAMAPYPLPPP 424
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 112 FIFFGCQPFWNQLNFRRRQW 53
F+ GC PFW N QW
Sbjct: 201 FVKTGCTPFWTYANITPNQW 220
>08_02_1535 + 27682812-27683528
Length = 238
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 345 TSTCASRCNGFRNLTVYQLCVYILVCCTEF 256
++T + CNGFR LT C+ ++C F
Sbjct: 36 SATIETMCNGFRRLTDVYSCMDEMMCLPSF 65
>07_03_0635 + 20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 163 IRFPTPYSLSFSNRDFAFIFFGCQPFWNQLNFRRRQWLSWDRYGTKLGT 17
+ FPT YS +F N+ A + Q +W + +++ YG GT
Sbjct: 1137 LSFPTKYSQNFLNQCVANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGT 1185
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 228 DGNYNTQFKQTPCSIPGCKHIADTLLDY--ENHYNATHRYSCAQCKKV 365
+ N + +PG +AD L + +++YSC +CKK+
Sbjct: 163 ESNKTDEIMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKL 210
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 339 YSCAQCKKVLPSPHFLDLHIQENHDSYF 422
YSCA C + L+ H+QE H + +
Sbjct: 497 YSCAVCMDSFTNRRVLERHVQEKHGAQY 524
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 330 THRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSVSVLGS 467
T +SC CKK+ + D H+ + Y A + +KK + ++ S
Sbjct: 678 TDDWSCYTCKKLEGEENEQDAHVADFSQRYDAAVEKKKKILDMIRS 723
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 231 GNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVL 368
G+YN + HI +T+ D +N Y + Y C Q ++ L
Sbjct: 59 GSYNNASRSEVLKTLSITHILNTVPDCQNLYRNSFTYHCIQDERSL 104
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 102 KKMNAKSLLEKLKEYGVGKRMLDDVL 179
K ++ KSLL ++KE KR DDVL
Sbjct: 817 KNLSTKSLLTEIKEINEKKRKEDDVL 842
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,516,280
Number of Sequences: 37544
Number of extensions: 366703
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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