Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H03
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028) 53 2e-07
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 39 0.004
SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0) 35 0.050
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0) 33 0.15
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_50607| Best HMM Match : Vicilin_N (HMM E-Value=0.88) 31 0.81
SB_37408| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 31 0.81
SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11) 31 0.81
SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 31 0.81
SB_54316| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 31 0.81
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_31148| Best HMM Match : zf-C2H2 (HMM E-Value=8.1) 31 0.81
SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2) 31 0.81
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 31 1.1
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_21889| Best HMM Match : Mak16 (HMM E-Value=3.8) 30 1.9
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11) 29 2.5
SB_29378| Best HMM Match : NHL (HMM E-Value=8.3) 29 3.3
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_17982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.7
SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29) 28 5.7
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1) 28 5.7
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 28 7.6
>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
Length = 401
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +3
Query: 309 YENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEK 440
+++HY H C CKK PS H L++HI ENHD+ F ++A K
Sbjct: 355 FDSHYKTCHWNVCRYCKKSFPSNHLLEIHILENHDTLFQMIARK 398
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 267 SIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLHIQEN 407
S P C + T + E H A+H Y+C+QC K +PH+L LH++ +
Sbjct: 451 SCPTCDRVFQTNANLERH-QASHSEERPYTCSQCDKAFKAPHYLALHMKSH 500
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 312 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSY 419
+ H NA H + C+ C+K L HI+ H +
Sbjct: 402 KKHTNADHPHECSTCQKTFEGKLSLISHIKSEHPEF 437
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 CKHIADTLLDYENHYN-ATHRYSCAQCKKVLPSPHFLDLHIQENHDSYF 422
C+ T L+Y H N YSC +C KV + L H + ++ F
Sbjct: 306 CQVTFSTELEYTVHKNDCNSHYSCDECGKVYKTAKLLRTHAKIHNKQRF 354
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 240 NTQFKQTPCSIPGCKHIADT---LLDYENHYNATHRYSCAQCKKVLPSPHFLDLHI 398
NT K CS C + T L+ + A + C QC K L S ++L H+
Sbjct: 821 NTMTKSLKCS--HCDEMFPTRANLIAHHKEVQAKGNFKCEQCDKSLLSQYYLKRHL 874
>SB_12745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 267 SIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLHIQEN 407
S P C + T + E H A+H Y+C+QC K +PH+L LH++ +
Sbjct: 383 SCPTCDRVFQTNANLERH-QASHSEERPYTCSQCDKAFKAPHYLALHMKSH 432
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 312 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSY 419
+ H NA H + C+ C+K L HI+ H +
Sbjct: 334 KKHTNADHPHECSTCQKTFEGKLSLISHIKSEHPEF 369
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 CKHIADTLLDYENHYN-ATHRYSCAQCKKVLPSPHFLDLHIQENHDSYF 422
C+ T L+Y H N YSC +C KV + L H + ++ F
Sbjct: 238 CQVTFSTELEYTVHKNDCNSHYSCDECGKVYKTAKLLRTHAKIHNKQRF 286
>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +3
Query: 246 QFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFA 425
Q T C CK L D E H ++ H SC C+K+ L+ H+ + H
Sbjct: 373 QTTTTKCEF--CKKEFTALEDLERHVSSNHDLSCIFCRKLFHGKSLLERHVSKRHKEGTK 430
Query: 426 VMAEKK 443
+ KK
Sbjct: 431 PLPSKK 436
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Frame = +3
Query: 228 DGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS---CAQCKKVLPSPHFLDLHI 398
+G+ ++ C + NH H+ + C CKK + L+ H+
Sbjct: 337 EGHLSSNHSNVLLKCDSCNEMVTGKRALRNHMKKVHQTTTTKCEFCKKEFTALEDLERHV 396
Query: 399 QENHD 413
NHD
Sbjct: 397 SSNHD 401
>SB_32644| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 365
Score = 35.1 bits (77), Expect = 0.050
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 273 PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 410
P H++ + + + C CKKV +PH L++H++ +H
Sbjct: 174 PSLDHVSPDRKKLKLESESQDTFDCMSCKKVFSTPHGLEVHVRRSH 219
>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 376
Score = 33.5 bits (73), Expect = 0.15
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 339 YSCAQCKKVLPSPHFLDLHIQENHDS 416
Y+C C+K+ +PH L++H++ +H S
Sbjct: 208 YACKTCQKIFCTPHGLEVHVRRSHAS 233
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 31.5 bits (68), Expect = 0.62
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 309 YENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHD 413
++N ++ Y C QC K+ S LD H++ H+
Sbjct: 165 HQNTHSGEKPYQCTQCDKLFGSQEILDRHVRAVHN 199
>SB_50607| Best HMM Match : Vicilin_N (HMM E-Value=0.88)
Length = 385
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLRAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_37408| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 323
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLRAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_5137| Best HMM Match : Phage_integrase (HMM E-Value=0.11)
Length = 834
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLREKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 406
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 52 EALSVFDLRAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 106
>SB_54316| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 187
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLRAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 394 CRSKKCGEGRTFLH*AHEYLCVAL*WFS*SNSVSAM--CLHPGMLHGVCLNWV 242
C S CG G T H + Y C+ F+ N + + C +HG C N +
Sbjct: 2754 CLSNPCGNGATCRHLVNNYTCICAVGFTGRNCLDDINECGSDPCVHGKCNNTI 2806
>SB_31148| Best HMM Match : zf-C2H2 (HMM E-Value=8.1)
Length = 120
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLRAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_25237| Best HMM Match : Phage_integrase (HMM E-Value=0.2)
Length = 845
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D + R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLRAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 99 PKKMNAKSLLEKLKEYGVGKRM--LDDVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSI 272
P+K + L+ K +E G R L DV F+ D+ P R+ + VD YN ++ P
Sbjct: 1575 PEKFPVRPLIIKTREVPQGPRSTKLQDV-FVGDR-PNRIFVAFVDSEGYNGSYRLNPFHF 1632
Query: 273 P 275
P
Sbjct: 1633 P 1633
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 99 PKKMNAKSLLEKLKEYGVGKRM--LDDVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSI 272
P+K + L+ K +E G R L DV F+ D+ P R+ + VD YN ++ P
Sbjct: 1361 PEKFPVRPLIIKTREVPQGPRSTKLQDV-FVGDR-PNRIFVAFVDSEGYNGSYRLNPFHF 1418
Query: 273 P 275
P
Sbjct: 1419 P 1419
>SB_21889| Best HMM Match : Mak16 (HMM E-Value=3.8)
Length = 336
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 171 DVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+ L + D R V + +K+ CS PGC I L NH NA H+ S
Sbjct: 41 EALSVFDLGAKRTKSEAVPEQRAKRTYKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 95
>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 339 YSCAQCKKVLPSPHFLDLHIQENH 410
+ C CKK+ PH L H+ H
Sbjct: 518 HQCEHCKKIFNRPHHLKAHVNTTH 541
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +3
Query: 252 KQTPCSIPGCKHIADTLLDYENHYNATHR---YSCAQCKKVLPSPHFLDLHIQENH 410
K+ P CK I H H+ + C +C+K P+ L H++ H
Sbjct: 660 KEKPYKCDVCKKIFGLSSSLSRHIRTVHQDKAFKCERCEKKFSQPYHLTRHVKGCH 715
>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
Length = 535
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 249 FKQTPCSIPGCKHIADTLLDYENHYNATHRYS 344
+K+ CS PGC I L NH NA H+ S
Sbjct: 176 YKRRVCSFPGCNLIVRRL---HNHLNAKHKLS 204
>SB_29378| Best HMM Match : NHL (HMM E-Value=8.3)
Length = 255
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 105 KMNAKSLLEKLKEYGVGKRM--LDDVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIP 275
K + L+ K +E G R L DV F+ D+ P R+ I VD YN ++ P P
Sbjct: 135 KFPVRPLIIKTREVPQGLRSTKLQDV-FVEDR-PNRIFIAFVDSEGYNGSYRHNPFHFP 191
>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +3
Query: 228 DGNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLH 395
D +YNT F C + D D H TH + C QC + +PS L +H
Sbjct: 531 DRHYNTTF----IFCQNCHIMFDCEEDLAKH-KETHTTNMIFKCEQCDEYMPSHSKLLIH 585
Query: 396 IQENHD 413
+E HD
Sbjct: 586 RKERHD 591
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 333 HRYSCAQCKKVLPSPHFLDLHIQENH 410
HRY C C++V SP H+++ H
Sbjct: 508 HRYLCMFCEEVFLSPGVFHKHLKDRH 533
>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2126
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 294 DTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 410
+ LL ++ H+N R C QC+ P L +H++ +H
Sbjct: 663 NVLLFWQVHHNIKVR--CPQCRDSFDHPRVLSMHLKSHH 699
>SB_17982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 297 TLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDS 416
TL+D+ +++ Y C++C K P L H++ + D+
Sbjct: 395 TLVDHIRTHSSERPYVCSECNKGFTHPSNLTSHMKTHSDN 434
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 306 DYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEK 440
D H ++ C +C+K+ SP+ L++H + H + EK
Sbjct: 176 DKRVHLPRERKHECMECQKLFDSPNALEVHFR-THTGERPYLCEK 219
>SB_46754| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-29)
Length = 487
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 291 ADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHD 413
+++L D+EN + + C C K SP L H + D
Sbjct: 96 SNSLFDHENRHTGELPFKCVVCGKAFISPQALGRHALVHSD 136
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = -3
Query: 296 ISYVFTSWYAARSLFKLGVIISIVHIVNSKSSWLFIMYKQNIIKHPFSYSIFFKLLQ*RF 117
+S T Y A G +I IV+ + L + + I HPF Y+ F + R
Sbjct: 654 VSLTGTWHYGAVVCDAQGFLIFSFGIVSVWTMCLIAVNRYIAISHPFLYTKTFTASRMRI 713
Query: 116 CIHFFWLSAFL 84
I F WL +L
Sbjct: 714 TIIFLWLLPWL 724
>SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)
Length = 556
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 105 KMNAKSLLEKLKEYGVGKRM--LDDVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIP 275
K + L+ K +E G R L DV F+ D+ P R+ + VD YN ++ P P
Sbjct: 292 KFPVRPLIIKTREVPQGPRSTKLQDV-FVGDR-PNRIFVAFVDSEGYNGSYRHNPFHFP 348
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 291 ADTLLDYENHYNATHRYSCAQCK-KVL 368
+D LLD HY HR+ C++CK KVL
Sbjct: 179 SDALLDTLEHYLRKHRF-CSECKSKVL 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,850,786
Number of Sequences: 59808
Number of extensions: 435565
Number of successful extensions: 1282
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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