Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H03
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12964-6|AAM29681.1|  329|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical...    33   0.13 
Z82074-1|CAB04928.2|  480|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL132864-6|CAB63395.1|  480|Caenorhabditis elegans Hypothetical ...    30   1.6  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    29   2.2  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    29   2.2  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    29   2.2  
Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U61949-4|AAB03150.2|  414|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    28   6.6  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   6.6  
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    27   8.7  

>U12964-6|AAM29681.1|  329|Caenorhabditis elegans Hypothetical
           protein F26F4.8 protein.
          Length = 329

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +3

Query: 261 PCSIPGCKHIADTLLDYENHYNATHRYS------CAQCKKV 365
           PC   GC  + +T+L+ ENH N  H  +      C  C +V
Sbjct: 107 PCRAEGCDQLVETMLEGENHANTAHHVNGTVSIKCKDCSEV 147


>AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical
           protein Y71A12B.15 protein.
          Length = 758

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 285 HIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKP---SVS 455
           ++ D   D+ ++Y  T RY  A C+KVLP   FLD       +  +  +A+  P    +S
Sbjct: 237 NVLDVSRDWPDNYRQTIRYFLA-CEKVLPELKFLDCSSAYLDEDLYKELAQSHPHLRKIS 295

Query: 456 VLG 464
           +LG
Sbjct: 296 LLG 298


>Z82074-1|CAB04928.2|  480|Caenorhabditis elegans Hypothetical
           protein W06H12.1 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +3

Query: 264 CSIPGCKHIADTLLDYENHYNATH---RYSCAQCKKVLPSPHFLDLH--IQENHDSY 419
           C + GC  +         H+  TH   R++C +CK      H L LH  I  N D+Y
Sbjct: 361 CPMDGCNKVFKEKGSVHRHF-VTHIGMRFNCDKCKASYTQKHALMLHQKIHANPDAY 416


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 279 CKHIADT--LLDY-ENHYNATHRYSCAQCKKVLPS 374
           CK   D   LL Y EN Y+A H + C  CKKVL S
Sbjct: 146 CKQHVDNSDLLTYQENPYHAYH-FKCTTCKKVLES 179


>AL132864-6|CAB63395.1|  480|Caenorhabditis elegans Hypothetical
           protein W06H12.1 protein.
          Length = 480

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = +3

Query: 264 CSIPGCKHIADTLLDYENHYNATH---RYSCAQCKKVLPSPHFLDLH--IQENHDSY 419
           C + GC  +         H+  TH   R++C +CK      H L LH  I  N D+Y
Sbjct: 361 CPMDGCNKVFKEKGSVHRHF-VTHIGMRFNCDKCKASYTQKHALMLHQKIHANPDAY 416


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 243 TQFKQTPCSI-PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 410
           TQ  QTP  + P C  +  +   + +H N    + C+ C     +   L  H++E+H
Sbjct: 306 TQNGQTPMLVCPICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 362


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 243 TQFKQTPCSI-PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 410
           TQ  QTP  + P C  +  +   + +H N    + C+ C     +   L  H++E+H
Sbjct: 328 TQNGQTPMLVCPICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 384


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 243 TQFKQTPCSI-PGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 410
           TQ  QTP  + P C  +  +   + +H N    + C+ C     +   L  H++E+H
Sbjct: 328 TQNGQTPMLVCPICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 384


>Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical
           protein M163.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
 Frame = +3

Query: 240 NTQFKQTPCSIPGCKHIADTLLDYENHYNATHR----YSC--AQCKKVLPSPHFLDLHIQ 401
           +T  K   C++P C        D   H   TH     Y C    C      P  L  H++
Sbjct: 313 HTGEKPYHCNVPNCNKSFTNASDRSKHSKRTHSNEKPYCCDFGSCACAYTDPSSLRKHVK 372

Query: 402 ENHDSYFAV-MAEKK 443
             H  + A+ MA +K
Sbjct: 373 SKHPEHHAMKMAMRK 387


>U61949-4|AAB03150.2|  414|Caenorhabditis elegans Hypothetical
           protein F49E8.2 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +3

Query: 216 YDVDDG-NYNTQF-KQTPCSIPGCKHIADTLLDYEN-HYNATHRYSCAQCKKVLPSPHFL 386
           ++V+ G N NT+  KQT       +H+ D   + E  + +   RY C  C + LP     
Sbjct: 211 HEVETGRNRNTKIRKQT-------EHVLDAHPESEFLNVDIAKRYECVHCLRTLPVSKSP 263

Query: 387 DLHIQENHD 413
             HI E+HD
Sbjct: 264 CEHISEHHD 272


>U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical
           protein F56D1.1 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 315 NHYNATHRYSCAQCKKVLPSPHFLDLHIQENH 410
           +H  A+H+  C QC      P F+  H ++NH
Sbjct: 130 HHSKASHK--CPQCSYTNEKPAFIRRHFEQNH 159


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +3

Query: 252 KQTPCSIPGCKHI---ADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQEN 407
           K  PC  PGC      +D L  +   +     ++C +C +       L LH++ +
Sbjct: 281 KPYPCEWPGCSWRFARSDELTRHYRKHTGAKPFACKECSRKFSRSDHLQLHMKRH 335


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 246 QFKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHD 413
           +  Q+   +   + + D+LL     + A   ++C  C K  P+   L +H  + HD
Sbjct: 118 RMSQSQWKVEQKQQLEDSLL---KPHTAGSIFTCVMCSKAFPNAEALQIHTDQVHD 170


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 307 SNSVSAMCLHPGMLHGVCLNWVL*FPSSTS*IPS-LVGCLSCINRTSSSIRFPTPYSLSF 131
           +N +SAM L PG  H +  +  L    S   +P  LVG L+  N+T  +I         F
Sbjct: 114 TNRLSAMLL-PGSYHKMWKSKRLWIAISVQFLPGMLVGLLTFFNKTQLAINEKNGLVPVF 172

Query: 130 SNRDFAFIFFGCQPFWNQLNF 68
            ++    IFF    F+   N+
Sbjct: 173 LDKQMTTIFFSIGGFFLFANY 193


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 414 NRGSPVCAGLRNAAKAEPSCIERTSTCASRCNGFRNLT 301
           N G+  C G R     E   +ER +T A R N F  +T
Sbjct: 21  NAGTCQCRGFRPVLNHEDETVERRATRAERENDFAPMT 58


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 312 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHD 413
           + H      Y CA C    PS   L  H+Q +HD
Sbjct: 229 KQHSRQLIMYGCALCATSYPSQLHLITHVQMSHD 262


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 339 YSCAQCKKVLPSPHFLDLHIQENHD 413
           ++C  C K  P+   L +H  + HD
Sbjct: 28  FTCVMCSKAFPNAEALQIHTDQVHD 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,363
Number of Sequences: 27780
Number of extensions: 350590
Number of successful extensions: 1125
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)