Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H03
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ...    60   1e-09
At5g13660.1 68418.m01590 expressed protein                             30   1.5  
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ...    30   1.5  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    29   3.5  
At2g05970.1 68415.m00648 F-box family protein contains F-box dom...    29   3.5  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    28   4.7  

>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 427

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +3

Query: 252 KQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYF 422
           ++  C I GC     +L  +E+HYNA H  SC+ C +V P+   L +HI E HDS+F
Sbjct: 142 RRISCPIVGCPERLKSLDHFEDHYNARHTASCSVCSRVYPTSRLLSIHISEAHDSFF 198


>At5g13660.1 68418.m01590 expressed protein 
          Length = 537

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 499 RKEYLNSFEIQLPSTLTEGFFSAITAKYESW 407
           +K   N+F   + S L+ G F  +T KY SW
Sbjct: 391 KKGSTNTFPSNVKSLLSTGIFDGVTVKYYSW 421


>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 830

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -1

Query: 307 SNSVSAMCLHPGMLHGVCLNWVL*FPSSTS*IPSLVGCLSCINRTSSSIRFPTPYSLSFS 128
           SN V    L P  ++ VC +W   FP S++ + +L+  LS ++  S+S      YS  F 
Sbjct: 129 SNLVVTSALDPTYVYHVCPSWAT-FPRSSTYMTNLITLLSTLSSPSAS------YSTGFQ 181

Query: 127 N 125
           N
Sbjct: 182 N 182


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 462 RAHSPKVSFRPSQQNTNRGSPVCAGLRNAAKAEPSCIERTSTCASRCNGFRNLT 301
           R   P V+F   + N   G  VC    N AK E    ER  TC  +  G+  +T
Sbjct: 19  RPSLPPVNFAAVEDNNTVGEKVCRDCGNRAKKE-CLFERCRTCC-KSRGYNCVT 70


>At2g05970.1 68415.m00648 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 245 GVIISIVHIVNSKSSWLFIMYKQNIIK 165
           G ++ +  +V     WLF +YK N IK
Sbjct: 263 GELLKVASVVQKSKRWLFRIYKMNYIK 289


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +3

Query: 114 AKSLLEKLKEYGVGKRMLDDVLFIHDKQPTRLGIYDVDDGNYNTQFKQTPCSIPGCKHIA 293
           AK+L++ L+  G+G R +   L       +++G  +VD  NY    +Q   SI G     
Sbjct: 196 AKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQK--SIEG---EI 250

Query: 294 DTLLDYENHYNA 329
             LLDY    NA
Sbjct: 251 QLLLDYLRQMNA 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,054
Number of Sequences: 28952
Number of extensions: 313385
Number of successful extensions: 857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)