Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_H02
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 51 1e-07
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 48 9e-07
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 41 1e-04
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 39 5e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 36 0.004
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 36 0.007
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 35 0.012
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.020
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.020
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.11
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.14
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.19
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 31 0.19
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.25
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 30 0.25
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.33
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 30 0.33
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.33
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.58
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 28 1.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 2.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 4.1
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.1
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 5.4
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 5.4
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.2
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 7.2
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.5
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 9.5
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 51.2 bits (117), Expect = 1e-07
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +2
Query: 194 ITDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCX 373
I D + + + + L CPIC + L++ TT C H +C +C++ L+ +K CPTC
Sbjct: 66 IPDTKTLLETFQKIKKTLECPICTEALQRPFTT-HCGHTYCYECLLNWLKE-SKSCPTCR 123
Query: 374 KKLVSKRS 397
+KL ++ S
Sbjct: 124 QKLYTQPS 131
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 48.4 bits (110), Expect = 9e-07
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +2
Query: 152 ELSLYELHRTPQEVITDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCII 331
+++ +E +++ + +T + P ++ L C +C + + T C FC +CI
Sbjct: 251 DVASWETYQSRKAALTANDVYKMQPPNI--SLACTLCKKLARNACRTPCCDKLFCEECIQ 308
Query: 332 TALRSGNKECPTCXKKLVSKRSLRPD 409
TAL + ECP C +K V +L PD
Sbjct: 309 TALLDSDFECPNCHRKDVLLDTLNPD 334
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 239 SELMCPICLDMLKKTMTTKECLHRFCNDCIITAL--RSGNKECPTCXKKL 382
++ C ICLD + ++ C H FCN CI++AL + ++CP C +K+
Sbjct: 202 ADYKCVICLDS-PENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 242 ELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 370
EL C IC ML + + C H FC C++ AL + + +CPTC
Sbjct: 166 ELECQICFGMLYDPVVSP-CGHTFCGPCLMQAL-TQSPQCPTC 206
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +2
Query: 221 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 370
S + L S L C IC + + + T C H FC+ CI LR + CP C
Sbjct: 19 SLKGLDSSLRCLICHEYFRAPLITS-CSHTFCSFCIRDYLRE-HPMCPAC 66
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +2
Query: 251 CPIC-----LDMLKKTMTTKECLHRFCNDCIITALRSGNKECPT-CXKKLVSKRSLRPDP 412
CP+C L+ K + EC H+ C C+ +G +CPT K++ K R
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKILRKAKFREQT 72
Query: 413 NFDLLISK 436
D I +
Sbjct: 73 FEDAQIER 80
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +2
Query: 248 MCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLVSKRSL-RPDPNFDL 424
+C IC + + T C H FC C IT R + PTC + + L D NFD
Sbjct: 253 VCLICKKDYRSPIATT-CGHHFCEQCAITRYR----KTPTCIQCGADTKGLFSVDKNFDR 307
Query: 425 LISKIYPSRDE 457
L+ DE
Sbjct: 308 LLKNRKSKNDE 318
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 251 CPICL---DMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLVSKRSLRPDP 412
C +CL ++ + K+C H F +CI L S CP C K V+ S P
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVASASTPSSP 581
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 33.9 bits (74), Expect = 0.020
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +2
Query: 251 CPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLVSKRSLRPDPNFDLLI 430
C IC ++ K + C H FC C+I + CP C K V K R + +
Sbjct: 360 CAICSNVAYKPVRLG-CSHVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNF 418
Query: 431 SKIYPSRDEYEAHQE 475
K Y R+ E +E
Sbjct: 419 MKTYFPREIKEKFEE 433
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 215 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRS 346
AV+ L L C +C+D++ + + C H C +C+ + S
Sbjct: 734 AVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITS 777
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 230 SLHSELMCPICLDMLKKTMTTKE---CLHRFCNDCIITALRSGNKECPTC 370
SL S C ICL+ ++ C H F CI L +GN CP C
Sbjct: 759 SLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLC 808
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/60 (23%), Positives = 23/60 (38%)
Frame = +2
Query: 197 TDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXK 376
T + A ++ + C +C K C H FC CI + + + CP C +
Sbjct: 609 TGVSTSAEELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICGR 668
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +2
Query: 236 HSELMCPICLDML----KKTMTTKECLHRFCNDCIITALRSGNKECPT--CXKKLVSK 391
H+ + C C + L KK++ +C H FC+ C LR CP C K++ K
Sbjct: 142 HNNIACAKCGNELVSDEKKSIFAAKCGHLFCSTC-AKELRKKTVPCPVQHCRKRITKK 198
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 251 CPICLDML---KKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLVSKRSL 400
CPIC + + ++ + C H C +R+ N CPTC K +++ SL
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRT-NYRCPTCYKTIINVNSL 322
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 242 ELMCPICL---DMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLVSKRSLRPDP 412
++ CP+C+ D+ K +C +R C C N CP C ++L ++ +++ P
Sbjct: 15 DMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPAC-RRLYTEENVQWRP 73
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 245 LMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 370
L C +C K+ C H FC++C+ CP C
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 455 EYEAHQELVLAKLSMSHSQASLVNSITEGIKLQSQN 562
+Y + ++ A +SM+H+ L S+ E +L+S+N
Sbjct: 120 DYMGYSDMARANISMTHNTGDLTVSLEEASRLESEN 155
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 281 TMTTKECLHRFCNDCIITALR-SGNKECPTCXKKL 382
T T +C H +C CI++ L+ N CP C ++
Sbjct: 207 TPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +2
Query: 251 CPICLDMLKK--TMTTKECLHRFCNDCIITALRSGNKECPTC 370
C ICL+ K + C H F CI + CPTC
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTC 362
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +2
Query: 467 HQELVLAKLSMSHSQASLVNSITEGIKLQSQNRPQRSXKNHDESSNASNSNGNVQTAQ 640
H + H+ S + G+ L +QN P++S ESSN + +N Q
Sbjct: 177 HSTANVTSTGQEHAPDSSSTNSFGGLLLPNQNSPKKSELGETESSNTTPANSRNDVPQ 234
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 452 DEYEAHQELVLAKLSMSHSQASLVNSITEGIKLQSQNRPQRSXKNHDESSNASNSNG 622
D Y H V A + S+ NS+ E +L SQ + S SN NG
Sbjct: 261 DGYSDHSVSVAAPIPKKESRKESSNSLYESYRLGSQIASPSPSVSGSASPTKSNKNG 317
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 233 LHSELMCPICLDMLKKTMTTKECLHRFCNDC 325
+H E C IC D + EC H FC C
Sbjct: 125 VHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 251 CPICLDMLKKT-----MTTKECLHRFCNDCIITALRSGN 352
CP C ++K MT K+C + FC C+ GN
Sbjct: 291 CPKCSTTIEKNGGCNHMTCKKCKYEFCWVCLGPWTEHGN 329
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 224 PRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLV 385
PR++ MCP+C L K + F ND +I A N++ P ++ +
Sbjct: 452 PRTMSFSKMCPLCCTTLSKFV---RHFFMFLNDSVILATEV-NEKAPRFYRRFI 501
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 558 CDCNFMPSVIEL 523
C CNF+PSV++L
Sbjct: 380 CSCNFLPSVLDL 391
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +2
Query: 434 KIYPSRDEYEAHQELVLAKLSMSHSQASLVNSITEGIKLQSQNRPQRSXKNHDESSNASN 613
+IY ++ + + S S S +SLV+S T S P + + SS++S+
Sbjct: 100 QIYAQSQQFNIVEGAASSSSSSSSSSSSLVSSTTSS---SSSATPSTTSSSSSSSSSSSS 156
Query: 614 SNGNVQTAQNGSN 652
S+ ++ + S+
Sbjct: 157 SSSKSSSSSSKSS 169
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +2
Query: 251 CPICLDMLKKTMTTKECLHRFCNDCI 328
CPIC + + C H C DC+
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCL 902
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +2
Query: 239 SELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCXKKLVSKRS 397
SE +C C +L + CLH DC + CP C + K++
Sbjct: 789 SEKVCDNCEGLLDVPFVSYSCLHLVHRDCATETV------CPKCKAGYLDKKN 835
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 351 LPDLKAVIIQSLQNLWRHSFVVIVFLSISKQIG 253
L ++ V I Q LW F+V V LSI Q+G
Sbjct: 452 LSSIEIVFIWYAQILWYLVFIVSVILSIYFQLG 484
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 89 PWNLEYIGKMSSTEPSQNKTWELSLYELHRTPQEVITDATEIA 217
PW + IGK + + T+ LS +P+E+ D ++A
Sbjct: 71 PWGNKAIGKRKNFRLYRLHTYSLSCNHSDWSPEELSLDTVQVA 113
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +2
Query: 251 CPICLDMLKKTMTTKECLHRFCNDCII 331
CP CL+ C H +C C++
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLL 240
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 454 RIRGSPRTGSG*TKHVPFTSFSRQFYN 534
R+ G PR +++PF+ RQ YN
Sbjct: 157 RVVGPPRANETPGRNLPFSPILRQIYN 183
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 173 VTRKGIAPMFYFAKALLKTFCQYILNS 93
VTR G +F K LL F +YILN+
Sbjct: 457 VTRHGTRTIFGAFKDLLNCFRRYILNN 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,134
Number of Sequences: 5004
Number of extensions: 49970
Number of successful extensions: 202
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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