Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_H02
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 233 LHSELMCPICLDMLKKTMTTKECLHRFCN 319
           LH +++C +C D+   +   +  L+ FC+
Sbjct: 19  LHGQVICFVCKDITSTSALYRLKLYLFCD 47


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 530 ITEGIKLQSQNRPQRSXKNHDESSNASNSNGNVQTAQNGSN 652
           + E  +  S N    +   +  +SN +N+N N     NG+N
Sbjct: 215 VLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGAN 255


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = -1

Query: 283 CL-FEHIQTDWAHQLAVKTSWGDRYFRRVCDHFLWST 176
           CL F+H    +A        WG   F  +  H L  T
Sbjct: 277 CLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKT 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,249
Number of Sequences: 438
Number of extensions: 3249
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)