Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_G24
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 264 5e-71
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 260 4e-70
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 260 4e-70
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 259 1e-69
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 258 2e-69
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 258 2e-69
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 257 4e-69
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 256 7e-69
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 256 9e-69
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 134 6e-32
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 134 6e-32
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 132 3e-31
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 130 6e-31
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 130 6e-31
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 128 3e-30
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 128 3e-30
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 110 9e-25
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 109 1e-24
At4g37190.1 68417.m05265 expressed protein 34 0.094
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 29 2.0
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 6.2
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.2
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 27 8.2
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 264 bits (646), Expect = 5e-71
Identities = 114/133 (85%), Positives = 128/133 (96%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 267
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 268 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDV 447
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 448 VRKEAESCDCLQG 486
VRKEAE+CDCLQG
Sbjct: 121 VRKEAENCDCLQG 133
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 155 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 188
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 260 bits (638), Expect = 4e-70
Identities = 113/132 (85%), Positives = 126/132 (95%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 260 bits (638), Expect = 4e-70
Identities = 115/133 (86%), Positives = 126/133 (94%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 267
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 268 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDV 447
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 448 VRKEAESCDCLQG 486
VRKEAE+CDCLQG
Sbjct: 121 VRKEAENCDCLQG 133
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 155 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 188
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 259 bits (634), Expect = 1e-69
Identities = 115/132 (87%), Positives = 124/132 (93%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 258 bits (633), Expect = 2e-69
Identities = 113/132 (85%), Positives = 124/132 (93%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWA GHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 258 bits (633), Expect = 2e-69
Identities = 113/132 (85%), Positives = 124/132 (93%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWA GHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 257 bits (630), Expect = 4e-69
Identities = 115/132 (87%), Positives = 124/132 (93%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+ DCLQG
Sbjct: 121 RKEAENSDCLQG 132
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 256 bits (628), Expect = 7e-69
Identities = 112/132 (84%), Positives = 125/132 (94%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATL 187
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 256 bits (627), Expect = 9e-69
Identities = 111/132 (84%), Positives = 124/132 (93%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 270
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 271 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLDVV 450
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWA GHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 451 RKEAESCDCLQG 486
RKEAE+CDCLQG
Sbjct: 121 RKEAENCDCLQG 132
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +2
Query: 551 KIXXXYPDRIMNTYSVVPSPKVSDTVVEPYNATL 652
KI YPDR+M T+SV PSPKVSDTVVEPYNATL
Sbjct: 154 KIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATL 187
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 134 bits (323), Expect = 6e-32
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 445 VVRKEAESCDCLQG 486
VRK A++C LQG
Sbjct: 121 RVRKLADNCTGLQG 134
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
+++ PSP+VS VVEPYN+ L
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVL 189
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 134 bits (323), Expect = 6e-32
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 445 VVRKEAESCDCLQG 486
VRK A++C LQG
Sbjct: 121 RVRKLADNCTGLQG 134
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
+++ PSP+VS VVEPYN+ L
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVL 189
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 132 bits (318), Expect = 3e-31
Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 445 VVRKEAESCDCLQG 486
+RK A++C LQG
Sbjct: 121 RLRKLADNCTGLQG 134
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
+++ PSP+VS VVEPYN+ L
Sbjct: 169 FTIYPSPQVSTAVVEPYNSVL 189
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 130 bits (315), Expect = 6e-31
Identities = 61/134 (45%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 445 VVRKEAESCDCLQG 486
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
++V PSP+VS +VVEPYN+ L
Sbjct: 169 FTVYPSPQVSTSVVEPYNSVL 189
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 130 bits (315), Expect = 6e-31
Identities = 61/134 (45%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 445 VVRKEAESCDCLQG 486
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
++V PSP+VS +VVEPYN+ L
Sbjct: 169 FTVYPSPQVSTSVVEPYNSVL 189
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 128 bits (309), Expect = 3e-30
Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 445 VVRKEAESCDCLQG 486
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
++V PSP+VS +VVEPYN+ L
Sbjct: 169 FTVYPSPQVSTSVVEPYNSVL 189
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 128 bits (309), Expect = 3e-30
Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 2/134 (1%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 264
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 265 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAXGHYTEGAELVDSVLD 444
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 445 VVRKEAESCDCLQG 486
+RK A++C LQG
Sbjct: 121 RIRKLADNCTGLQG 134
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 590 YSVVPSPKVSDTVVEPYNATL 652
++V PSP+VS +VVEPYN+ L
Sbjct: 169 FTVYPSPQVSTSVVEPYNSVL 189
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 110 bits (264), Expect = 9e-25
Identities = 49/133 (36%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Frame = +1
Query: 94 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 273
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 274 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAXGHYTEGAELVDSVLDV 447
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 448 VRKEAESCDCLQG 486
+ +EA+ D L+G
Sbjct: 122 IDREADGSDSLEG 134
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 566 YPDRIMNTYSVVPSP-KVSDTVVEPYNATL 652
Y +++ TYSV P+ + SD VV+PYN+ L
Sbjct: 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLL 190
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 109 bits (263), Expect = 1e-24
Identities = 49/133 (36%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Frame = +1
Query: 94 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 273
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 274 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAXGHYTEGAELVDSVLDV 447
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 448 VRKEAESCDCLQG 486
+ +EA+ D L+G
Sbjct: 122 IDREADGSDSLEG 134
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2
Query: 566 YPDRIMNTYSVVPSP-KVSDTVVEPYNATL 652
Y +++ TYSV P+ + SD VV+PYN+ L
Sbjct: 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLL 190
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 33.9 bits (74), Expect = 0.094
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 91 MREIVHIQAGQCGNQIGAKFWEIISDEHGI--DP-TGAYHGDSDLQLERINVYYNEASG- 258
MREIV IQ G+ N +G+ FW + G+ DP + + +L ++ + G
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 259 GKYVPRAILVDLEP--GTMDS 315
Y PR + V+L+ GTM S
Sbjct: 61 ATYTPRLVSVNLKGALGTMSS 81
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1
Query: 424 LVDSVLDVVRKEAESCDCLQ 483
+++SV VVRKEAE+C+CLQ
Sbjct: 1 MINSV-GVVRKEAENCNCLQ 19
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 261 AAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFPHFVL 82
AAGGF + I + + ++ VP G VL+GD DL A L + FP +L
Sbjct: 136 AAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFPDGIL 194
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 97 EIVHIQAGQCGNQIGAKFWEIISD 168
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 27.5 bits (58), Expect = 8.2
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Frame = -3
Query: 524 NRCRRRASVSVGXP-WRQSHDSASFRTTSKTESTSSAPSV*CPLAQLLPAPDCPKTKLSG 348
N R +++ S G R DSA+ ++S ++ S+ S + PAP P L
Sbjct: 85 NSVRSQSNSSSGNNNLRPRSDSATTSSSSHSQPLLSSSSS----SATSPAPTSPANVLPT 140
Query: 347 RKICPKG--------PERTESMVPGSKSTRMARGTYLPPEASL*YTLMRSNCKSESPW*A 192
ICP G R+ S V GS + G+ + + S SP
Sbjct: 141 GNICPSGKIQITGMTQSRSRSDVLGSGTGTYGHGSIMRGGGISPAKPTNTGGGSNSP--V 198
Query: 191 PVGSMPCSSEMISQNLAPIW 132
VGS SS ++ PIW
Sbjct: 199 NVGSSSRSSSTVATGETPIW 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,507
Number of Sequences: 28952
Number of extensions: 240005
Number of successful extensions: 718
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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