Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G23
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    80   2e-16
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   5.2  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   6.9  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    25   6.9  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   9.1  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   9.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   9.1  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
 Frame = +3

Query: 48  MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXX 224
           MVN+PK R+TY               Q  +G     A         ++ +GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 225 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKGQMIQF 362
                  +VLRLEC  CK ++Q+ LKRCKHFELGG+   KG  IQF
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 113 LVYFVAFTFFAVRPALFWYVHHF 45
           LVY + + +F   P LF  V+HF
Sbjct: 329 LVYSILYLWFEAFPILFTTVYHF 351


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 113 LVYFVAFTFFAVRPALFWYVHHF 45
           L+Y + + +F   P LF  V+HF
Sbjct: 329 LIYSILYLWFEAFPILFTSVYHF 351


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 358 WIICPFLXLSPPSSKCLHLFNATCDLTLQSAHSRRSTIFLVV 233
           W+ C  +           L NA C+L L SA +  S++  VV
Sbjct: 41  WVSCSEMCQKRTKHLFRELQNALCELYLSSATTNDSSLLSVV 82


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 112 LCTLWHLHFLQYVLRCFGTFTIFE 41
           L TL+H   + + + C G F +F+
Sbjct: 75  LLTLFHFPIIGFFVECLGFFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 196 VVSPNPSSKRRQKPLRKLCSVLS 264
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 149 LPSAXRRYDRKQQGLRWSVQTHLQKE 226
           LPS  RR  +K   L  S+  HL+ E
Sbjct: 135 LPSLSRRNSKKSSTLSRSISLHLRSE 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,556,460
Number of Sequences: 5004
Number of extensions: 28620
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)