Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_G23
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 73 8e-14
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 73 8e-14
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 73 8e-14
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 71 3e-13
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 71 3e-13
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 71 3e-13
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 71 3e-13
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 48 3e-06
01_06_1071 - 34289609-34292941 30 0.96
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 29 1.3
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 29 1.7
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 27 5.1
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 73.3 bits (172), Expect = 8e-14
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +3
Query: 48 MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXX 224
MVNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 225 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 73.3 bits (172), Expect = 8e-14
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +3
Query: 48 MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXX 224
MVNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 225 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 73.3 bits (172), Expect = 8e-14
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +3
Query: 48 MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXX 224
MVNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 225 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 51 VNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXXX 227
VNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 228 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 51 VNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXXX 227
VNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 228 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 51 VNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXXX 227
VNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 88
Query: 228 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 89 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 71.3 bits (167), Expect = 3e-13
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 51 VNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXXX 227
VNVPK ++TY Q +GK A ++ YGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 228 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHFE+GGD KG
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 246 IVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
IVL+L+C CK SQ +KRCKHF++GGD KG
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGDKKGKG 58
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 29.9 bits (64), Expect = 0.96
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 255 GAQFS*WFLPSF*RWVWTDHRKPCCLRS*RLXALGSVPFLGLFVL 121
G +F W SF + T H C RS RL ALG +PFL V+
Sbjct: 756 GVRFPSWLASSFLPKLQTIHI--CNCRSTRLPALGQLPFLKYLVI 798
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 196 VVSPNPSSKRRQKPLRKLCSVLSVPIAR 279
VV+P P +R+Q+PL C S+P R
Sbjct: 58 VVAPAPRHRRKQRPLHYACRPTSLPCRR 85
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 247 IFLVVFAFFLKMGLD*PP*ALLFTIITSXSAGQRAFPWTFCTVIALCTL 101
+ LV+F+FF K+G ALL +I + +A F W + L TL
Sbjct: 636 VLLVIFSFFGKIG------ALLASIPVALAASVLCFTWALIVALGLSTL 678
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 110 VYFVAFTFFAVRPALFWYV 54
V FV F F+ VRP ++W +
Sbjct: 259 VLFVLFCFYVVRPGMWWLI 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,857
Number of Sequences: 37544
Number of extensions: 191205
Number of successful extensions: 448
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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