Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_G23
(444 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 95 3e-20
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 58 4e-09
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 29 2.3
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 27 5.3
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 7.0
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) 27 7.0
SB_44026| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_10738| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_54364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 94.7 bits (225), Expect = 3e-20
Identities = 50/108 (46%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +3
Query: 42 SKMVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIF 218
S +VNVPKQR+T+ Q GKA A ++ +GGQ+KP+F
Sbjct: 6 SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65
Query: 219 XXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKGQMIQF 362
IVLR+EC CK R Q+ LKRCKHFELGGD RKGQMIQF
Sbjct: 66 HKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 57.6 bits (133), Expect = 4e-09
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = +3
Query: 246 IVLRLECADCKVRSQVALKRCKHFELGGDXXRK 344
IVLR+EC CK R Q+ LKRCKHFELGGD RK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 46 KW*TYQNSAGRTAKNVNATKYTRLSQYKKSKERHAA------QRXKTL 171
+W T N +NV+ +Y R+++ KK ++H A QR KTL
Sbjct: 1257 RWSTKTNQLMEQYRNVDPDEYKRMTEEKKQFQQHVASLKSESQRSKTL 1304
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 258 LECADCKVRSQVALKRCKHFELG 326
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 159 LXDVMIVNSRAYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELG 326
L D +I NS++ +SK + I L C C V +A KRC+ +G
Sbjct: 105 LDDSLIKNSQSE--ESKVFYNKIVLPTSNITTALNCKTCNVVYLIACKRCQKQYVG 158
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 375 LEAFKIGSSVPFXXCHHRAQSACI 304
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
Length = 318
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 139 PWTFCTVIALCTLWHLHFLQYVLRCFGTFTI 47
PW + +I +CT + L + FG +T+
Sbjct: 12 PWNYTEIIVICTSFSAIGLYFARLAFGKYTV 42
>SB_44026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 IYIFCSTSCAVLVRSPFLSSFGTDIKQ 16
+Y + VLVRSP LSS G D+ Q
Sbjct: 87 VYGHTTEKAPVLVRSPNLSSVGRDLTQ 113
>SB_13708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 134 PRKGTLPSAXRRYDRKQQGLRWSVQTHLQK-EGKNH*EN 247
P+ T+PS+ + + G W ++ QK E KN+ N
Sbjct: 21 PKDNTIPSSAPKISVSKNGFSWKLREKSQKTENKNNYNN 59
>SB_10738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 IYIFCSTSCAVLVRSPFLSSFGTDIKQ 16
+Y + VLVRSP LSS G D+ Q
Sbjct: 4 VYGHTTEKAPVLVRSPNLSSVGRDLTQ 30
>SB_54364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 96 IYIFCSTSCAVLVRSPFLSSFGTDIKQ 16
+Y + VLVRSP LSS G D+ Q
Sbjct: 34 VYGHTTEKAPVLVRSPNLSSVGRDLTQ 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,604
Number of Sequences: 59808
Number of extensions: 221890
Number of successful extensions: 552
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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