Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G23
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    83   9e-17
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    83   9e-17
Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    27   6.1  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    27   6.1  
Z49071-6|CAA88876.2|  292|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 83.0 bits (196), Expect = 9e-17
 Identities = 42/105 (40%), Positives = 56/105 (53%)
 Frame = +3

Query: 48  MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRAYGGQSKPIFXXX 227
           MVNVPK RRT+            +T  K   +++              +GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 228 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKGQMIQF 362
                 IVLR+EC +CK + Q+ +KRCKHFELGG    +GQ+IQF
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 83.0 bits (196), Expect = 9e-17
 Identities = 42/105 (40%), Positives = 56/105 (53%)
 Frame = +3

Query: 48  MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRAYGGQSKPIFXXX 227
           MVNVPK RRT+            +T  K   +++              +GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 228 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKGQMIQF 362
                 IVLR+EC +CK + Q+ +KRCKHFELGG    +GQ+IQF
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 STQGYHSTKSPRKGTLPSAXRRYDRKQQGLRWSVQTHLQKE 226
           S+Q  HS+K  RKG L +  + + RK  G+    +  L K+
Sbjct: 214 SSQRKHSSKRNRKGLLRNVAKLWGRKSDGIANPTKAMLSKK 254


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 79  TAKNVNATKYTRLSQYKKSKE 141
           T  N+NA KY+ L+QY++ KE
Sbjct: 174 TVCNLNAFKYSELTQYEEIKE 194


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 79  TAKNVNATKYTRLSQYKKSKE 141
           T  N+NA KY+ L+QY++ KE
Sbjct: 174 TVCNLNAFKYSELTQYEEIKE 194


>Z49071-6|CAA88876.2|  292|Caenorhabditis elegans Hypothetical
           protein T22C8.4 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 142 FPWTFCTVIALCTLWHLHFLQYVLRCFGTFTI-FEFV-RHGYQTNV 11
           FP TFC+++ +  +     L +    F  F++ + F+ RH +QT V
Sbjct: 8   FPSTFCSLVVVIVICSTSLLTHCTTAFFKFSLKYVFILRHLHQTPV 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,237
Number of Sequences: 27780
Number of extensions: 168423
Number of successful extensions: 473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)