Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G23
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)      73   9e-14
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...    73   9e-14
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    27   5.7  
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa...    26   10.0 
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    26   10.0 

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score = 72.9 bits (171), Expect = 9e-14
 Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +3

Query: 48  MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXX 224
           MVN+PK + TY               Q  +GK    A         ++ YGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 225 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
                  IVLRL+C  CK  SQ  +KRCKHFE+GGD   KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score = 72.9 bits (171), Expect = 9e-14
 Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
 Frame = +3

Query: 48  MVNVPKQRRTYXXXXXXXXXXXAITVQKVQGKARCPALXDVMIVNSRA-YGGQSKPIFXX 224
           MVN+PK + TY               Q  +GK    A         ++ YGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 225 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDXXRKG 347
                  IVLRL+C  CK  SQ  +KRCKHFE+GGD   KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 340 LXLSPPSSKCLHLFNATCDLTLQSAHSRRST 248
           L  SPPSS C      +CDL L S  S  S+
Sbjct: 9   LYASPPSSVCSTPHQISCDLDLTSRSSSTSS 39


>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 351

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 390 QWSYLLEAFKIGSSVPFXXCHHRAQSACISSMQPVISPC 274
           Q S  L+ F+IG+      C H+  S C+     + S C
Sbjct: 222 QCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSC 260


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 114 PCVLCGIYIFCSTSCAV 64
           PC  C I ++CS SC +
Sbjct: 276 PCPSCSIPVYCSESCQI 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,294,270
Number of Sequences: 28952
Number of extensions: 153126
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)