Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G18
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   3.8  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    24   8.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    24   8.8  

>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 155 LRLPWPELSVEPXGD 199
           +R+PWP L+VE  GD
Sbjct: 174 IRIPWPVLTVEFYGD 188


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 180 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRXVRPMY 49
           ESS HG  SL  A +P T  V   L  W+ +F+    R     Y
Sbjct: 24  ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 97  PFSQLKLNEIGSWFGRRSXTPSAVA 171
           P   ++L ++ S+F RRS  P ++A
Sbjct: 595 PLKLIQLGKLSSYFVRRSFVPYSIA 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,731
Number of Sequences: 5004
Number of extensions: 28175
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)