Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G18
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44...    30   0.71 
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568     29   1.6  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    28   2.9  
09_04_0385 + 17167174-17167440,17173321-17173962                       27   6.6  
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043...    27   8.7  

>11_01_0058 +
           438000-438230,438847-438902,440003-440117,440314-440424,
           442331-442518,442957-443013,443109-443268,443368-443436,
           443580-443699
          Length = 368

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 19  GDYPKEYNPAVHGPYXPARYYGKPDTPFSQLKLNEIGSWFGRRSXTPSAVAGA 177
           GD+   Y P     Y P  Y+G+P  P + L+   +G        TPS V  A
Sbjct: 15  GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63


>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
          Length = 605

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 178 KLRPRQTESXCGDRTTNRFRSASTD*MEYQVFHSSVQDXKAHV 50
           +L P   +  C D  T  FR AS D ++  +FH      K H+
Sbjct: 532 ELPPMHHDGECPDHMTTIFRDASRDSIDRAMFHDVFLVIKTHL 574


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 128 VRGSVAAARLRLPWPELSVEPXGDGNISTYNLRRLAWLHS 247
           VR S A +R   P   + VE   DG+  T++L +L W HS
Sbjct: 34  VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72


>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 204 LPSPXGSTESSGHGRRSLAAATEPRTD 124
           LP    +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>12_02_0761 - 22901121-22901917,22902111-22902707,22904282-22904358,
            22906543-22907135,22907552-22908118,22908431-22908958,
            22909115-22909432,22910622-22910656,22910986-22911301
          Length = 1275

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 170  PELSVEPXGDGNISTYNLRRLAWLHSINYSLAAWSSSM 283
            P +++   G+G ++   LRRL  LH++     +W  S+
Sbjct: 1036 PSIAMRLQGNGVVAPRGLRRLTALHTLGVVDISWQPSI 1073


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,398
Number of Sequences: 37544
Number of extensions: 200168
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)