Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G18
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            30   0.95 
SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        28   2.9  
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             28   2.9  
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)                 27   6.7  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 27   8.8  

>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 130 SWFGRRSXTPSAVAGAFSRAXWRWQHKYV 216
           SW  RRS   S     FS   WRW H++V
Sbjct: 489 SW-SRRSAATSLDTKTFSIEYWRWHHRFV 516


>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +1

Query: 94  TPFSQLKLNEIGSWFGRRSXTPSAVAGAFSRAXWRWQHKYVQPKKVGMAPFYQLLVGSMV 273
           T F + KL   G +  R +   +   G  SR    ++ KYV  K   M PF+  +  +  
Sbjct: 2   TSFGETKLKNAGDYVVRNASLENMWRG-MSRVWNSYRAKYVTCKNARMTPFWHAVFVAAA 60

Query: 274 FFYAI 288
             YAI
Sbjct: 61  LNYAI 65


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 142 RRSXTPSAVAGAFSRAXWRWQHKYVQPKKVGMAPFY 249
           RRS   S     FS   WRW H++       +  FY
Sbjct: 785 RRSAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 91  DTPFSQLKLNEIGSWFGR 144
           D+P +QL LNEI SWF R
Sbjct: 423 DSPDTQLTLNEIYSWFTR 440


>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
          Length = 231

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 115 LNEIGSWFGRRSXTPSAVAGAFS-RAXWRWQ 204
           LN IGS  GRR  +   V GA + +  W WQ
Sbjct: 22  LNRIGSCCGRRPASSRVVNGANAPQHAWPWQ 52


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 58  PYXPARYYGKPDTPFSQLKLNEIGSWFGRRSXTPSAVAGAFSRAXW 195
           P  P R Y  PD+PF+  +L    S   R+S +P+      +   W
Sbjct: 259 PPAPVRLYMHPDSPFTGEQLLNRSS-RSRKSSSPTTTQTTMATIYW 303


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,192
Number of Sequences: 59808
Number of extensions: 218810
Number of successful extensions: 439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)