Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G18
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02835.1 68415.m00229 hypothetical protein                          29   1.4  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    27   5.5  
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family...    27   7.2  
At1g76990.3 68414.m08966 ACT domain containing protein low simil...    27   7.2  
At1g76990.2 68414.m08965 ACT domain containing protein low simil...    27   7.2  
At1g76990.1 68414.m08964 ACT domain containing protein low simil...    27   7.2  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    26   9.5  

>At2g02835.1 68415.m00229 hypothetical protein
          Length = 198

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 28  PKEYNPAVHGPYXPARYYGKPDTPFSQL 111
           P+EY  ++  PY P      PD+PF+ L
Sbjct: 121 PEEYEDSLISPYIPEAVLRSPDSPFALL 148


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 186 STESSGHGRRSLAAATEPRTDFVQ 115
           S+ S G+G+ S  AA+EP TD VQ
Sbjct: 34  SSSSHGNGQVSKEAASEPATDQVQ 57


>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 147

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 25  YPKEYNPAVHGPYXPARYYGKPDTP 99
           YP  Y    +G Y P  YYG   TP
Sbjct: 80  YPPPYGGDGYGGYYPPPYYGNYGTP 104


>At1g76990.3 68414.m08966 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 148 CGDRTTNRFRSAST-D*MEYQVFHSSVQDXKAHVQQDY 38
           C DR    F    T   M+Y VFH+++    +H  Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308


>At1g76990.2 68414.m08965 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 148 CGDRTTNRFRSAST-D*MEYQVFHSSVQDXKAHVQQDY 38
           C DR    F    T   M+Y VFH+++    +H  Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308


>At1g76990.1 68414.m08964 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 148 CGDRTTNRFRSAST-D*MEYQVFHSSVQDXKAHVQQDY 38
           C DR    F    T   M+Y VFH+++    +H  Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +3

Query: 72  TLLWKT*YSIQSVEAERNRFVVRSPQXDSVCRGRSFQSSL 191
           T L K  +   SV  ER+    +SP  DS  RG+  +SSL
Sbjct: 349 TNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSL 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,892
Number of Sequences: 28952
Number of extensions: 148362
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)