Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G17
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49710.1 68414.m05573 fucosyltransferase-like protein, putati...    33   0.22 
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    30   1.5  
At5g54920.1 68418.m06840 expressed protein                             29   2.7  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    29   3.6  
At2g30200.1 68415.m03672 expressed protein                             28   6.2  
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    28   6.2  

>At1g49710.1 68414.m05573 fucosyltransferase-like protein, putative
           / FucT2, putative / FucTB, putative (FUT12) identical to
           Putative fucosyltransferase-like protein (FucTB) (FucT2)
           (AtFUT12) (Swiss-Prot:Q9FX97) [Arabidopsis thaliana];
           similar to glycoprotein 3-alpha-L-fucosyltransferase A
           (SP:Q9LJK1) [Arabidopsis thaliana]; contains Pfam
           profile PF00852: Fucosyl transferase
          Length = 513

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -3

Query: 377 GPAGGATHRPAHSGGGTPSRTLARTSSPGAXISGAL---TSLTLPNLVGMNGRLAQSAFI 207
           GP  GATH    +  G+PS + + +SS    +S  L    +L +   +G  GRL + A +
Sbjct: 9   GPRAGATHDEFPATNGSPSSSSSPSSSIKRKLSNLLPLCVALVVIAEIGFLGRLDKVALV 68

Query: 206 HTVT 195
            T+T
Sbjct: 69  DTLT 72


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 458 LSRHETASSSHRVANVLAVPXASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 297
           +S     S SH  ++  A P  S     P    +H P+HS   TPS + A T S
Sbjct: 188 ISHTPALSPSHATSHSPATPSPSPKSPSPV---SHSPSHSPAHTPSHSPAHTPS 238



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 401 PXASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGAXISGALTSLT 258
           P  S AH  P+    H P+HS   +PS + A   SP    S A +  T
Sbjct: 245 PSHSPAHA-PSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPAT 291


>At5g54920.1 68418.m06840 expressed protein
          Length = 517

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = -3

Query: 431 SHRVANVLAVPXASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGAXISGALTSLTLP 252
           SH  +    VP  + A TG AGG +H P H  G T +R      +           L  P
Sbjct: 351 SHASSPSKFVPYTNLA-TGNAGGGSHFPQHMVGPTINRGQPHRFTTQYHSVQPTPMLVNP 409

Query: 251 NLVGMNGRLAQSAFIHTVTKTI 186
           N   M GR  Q  ++  +++ +
Sbjct: 410 NPQVMVGRSGQLMYMQPISQDL 431


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 370 PAGPRTALHTA-AAAPPRGPSLGPAHPGLSYPV 275
           P+ P + LH+  ++APPR     P HP LS  V
Sbjct: 267 PSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDV 299


>At2g30200.1 68415.m03672 expressed protein
          Length = 393

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 24/87 (27%), Positives = 39/87 (44%)
 Frame = -3

Query: 329 TPSRTLARTSSPGAXISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQAKTFPLNISN* 150
           +PS +L R +S  A  + A +SL LP++   N   +++A      K +      +++S  
Sbjct: 13  SPSHSLIRRTSLSAMATTASSSLLLPSISLNNLSSSKNASFGFAAKNLSRSRISMSVSAG 72

Query: 149 VQIQTPPHSVRDSLNTKYERCSFI*LP 69
            Q  T    V DSL   Y+  S    P
Sbjct: 73  SQSTT----VHDSLFADYKPTSAFLFP 95


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 386 AHTGPAGGATHRPAHSGGGTPSRTLARTSS 297
           A + PA GA+  PA  G  TPS   + TSS
Sbjct: 262 ASSTPAFGASSTPAFGGSSTPSFGASNTSS 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,686
Number of Sequences: 28952
Number of extensions: 296082
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)