Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_G16
(450 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062344-1|AAH62344.1| 256|Homo sapiens PTCHD1 protein protein. 30 3.2
X13929-1|CAA32117.1| 448|Homo sapiens P-450 IIA3 protein (1 is ... 29 7.3
X13897-1|CAA32097.1| 489|Homo sapiens protein ( Human mRNA for ... 29 7.3
M33318-1|AAA52067.1| 494|Homo sapiens CYP2A protein. 29 7.3
BC096256-1|AAH96256.1| 494|Homo sapiens cytochrome P450, family... 29 7.3
BC096254-1|AAH96254.1| 494|Homo sapiens cytochrome P450, family... 29 7.3
BC096253-1|AAH96253.3| 494|Homo sapiens cytochrome P450, family... 29 7.3
AJ626860-1|CAF25187.1| 3585|Homo sapiens VPS13C-1B protein protein. 29 7.3
AJ608770-1|CAE75582.1| 3710|Homo sapiens VPS13C-1A protein protein. 29 7.3
AF182275-1|AAF13600.1| 494|Homo sapiens cytochrome P450-2A6 pro... 29 7.3
Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen... 29 9.7
X55525-1|CAA39142.1| 397|Homo sapiens type I collagen protein. 29 9.7
J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein. 29 9.7
BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha... 29 9.7
BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha... 29 9.7
AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen... 29 9.7
AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen prot... 29 9.7
>BC062344-1|AAH62344.1| 256|Homo sapiens PTCHD1 protein protein.
Length = 256
Score = 30.3 bits (65), Expect = 3.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 355 HSIYLGLCT*ILKNYFSGFRCFRGLQIFIKFVE 257
+S +LG+ +L NY+S F CFR L + +F++
Sbjct: 221 NSTFLGVPFVMLGNYYSSFFCFRLLVVLTRFLK 253
>X13929-1|CAA32117.1| 448|Homo sapiens P-450 IIA3 protein (1 is 3rd
base in codon) protein.
Length = 448
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 101 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 141
>X13897-1|CAA32097.1| 489|Homo sapiens protein ( Human mRNA for
cytochrome P-450IIA. ).
Length = 489
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 142 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 182
>M33318-1|AAA52067.1| 494|Homo sapiens CYP2A protein.
Length = 494
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 147 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 187
>BC096256-1|AAH96256.1| 494|Homo sapiens cytochrome P450, family 2,
subfamily A, polypeptide 6 protein.
Length = 494
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 147 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 187
>BC096254-1|AAH96254.1| 494|Homo sapiens cytochrome P450, family 2,
subfamily A, polypeptide 6 protein.
Length = 494
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 147 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 187
>BC096253-1|AAH96253.3| 494|Homo sapiens cytochrome P450, family 2,
subfamily A, polypeptide 6 protein.
Length = 494
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 147 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 187
>AJ626860-1|CAF25187.1| 3585|Homo sapiens VPS13C-1B protein protein.
Length = 3585
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 104 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
A +K DA KE+ SL + + IEE +K P+ KK+
Sbjct: 94 ASIKYDAVKEEKSLQDVKQKELSRIEEALQKAAEKDKPKEAKKD 137
>AJ608770-1|CAE75582.1| 3710|Homo sapiens VPS13C-1A protein protein.
Length = 3710
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 104 AFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
A +K DA KE+ SL + + IEE +K P+ KK+
Sbjct: 94 ASIKYDAVKEEKSLQDVKQKELSRIEEALQKAAEKDKPKEAKKD 137
>AF182275-1|AAF13600.1| 494|Homo sapiens cytochrome P450-2A6
protein.
Length = 494
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 259 EAVYHRAKVFLNSLRGQGGFNFFPQFLNCFLRTLSQRI*AIVF 131
E + A +++LRG GG N P F RT+S I +IVF
Sbjct: 147 ERIQEEAGFLIDALRGTGGANIDPTFF--LSRTVSNVISSIVF 187
>Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 1116 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 1158
>X55525-1|CAA39142.1| 397|Homo sapiens type I collagen protein.
Length = 397
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 157 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 199
>J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein.
Length = 1366
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 1116 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 1158
>BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 1116 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 1158
>BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 1116 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 1158
>AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen
protein.
Length = 1366
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 1116 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 1158
>AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen protein.
Length = 1186
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 107 FVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKN 235
F + D P+ SL T++ L ++E+ L PE +KN
Sbjct: 936 FYRADQPRSAPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKN 978
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,225,338
Number of Sequences: 237096
Number of extensions: 1056319
Number of successful extensions: 2163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -