Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G16
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07777.1 68415.m00893 expressed protein                             30   0.63 
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s...    29   1.9  
At1g73090.1 68414.m08451 expressed protein                             28   2.5  
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (...    28   3.4  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    27   4.4  
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1...    27   4.4  
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    27   4.4  
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil...    27   5.9  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    27   5.9  
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    27   7.7  

>At2g07777.1 68415.m00893 expressed protein
          Length = 262

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 255 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLA 91
           LS+ V  FF    G+++ S F+L   ++    S  +FR L      R+T  C LA
Sbjct: 11  LSSSVAGFFGRFLGSESVSRFNLIIFLILLVFSICLFRSLKQYLGKRMTQWCYLA 65


>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 673

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 122 APKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 280
           A KE+      +ES  + + +L+E+  + +  ETVKK+ G ++   N+   N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622


>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 208 LGPGDC*EKLWHDGRQLQRI 267
           +GPG C  + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291


>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
           (HP3) identical to ATHP3 [Arabidopsis thaliana]
           GI:4156245
          Length = 154

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 255 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFA-LSASVFRLL---SSLGASRLTNACTLAR 88
           +S +V  FF        D + SL+  +V F  +   V +L    SS+GA R+ NAC + R
Sbjct: 42  VSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFR 101

Query: 87  QIANK 73
               +
Sbjct: 102 SFCEQ 106


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 98  VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESA 208
           VH   KRD+  +   L    ESA++ ++EL + + S+
Sbjct: 563 VHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSS 599


>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
            family protein similar to 13S condensin XCAP-D2 subunit
            [Xenopus laevis] GI:3764087; contains Pfam profile
            PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
          Length = 1439

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 140  SLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYK 274
            SL T  E   K + E  +  E ALA + V +NF ++++   +F K
Sbjct: 1171 SLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAK 1215


>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 RDAPKEDNSLNTLAESAKKTIEELR-EKVESALAPETVKKNF 238
           RDA +E  +L  + E  KKT +E + +KVE A   + VK NF
Sbjct: 104 RDAAREA-ALREIKERIKKTKDEKKAKKVEFASKQQKVKANF 144


>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
           to PRLI-interacting factor N [Arabidopsis thaliana]
           GI:11139276; contains Pfam profile PF01713: Smr domain
          Length = 519

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +2

Query: 113 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 292
           KR    + +   T ++  KK +EE R+  E     E V KNF   ++S  E + ++   E
Sbjct: 12  KRSCAAKPSGDGTTSDGNKKDVEEERKDGEGKREIENVGKNF---IESLMEAFCSVSMEE 68

Query: 293 APKA 304
           A  A
Sbjct: 69  AMAA 72


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 225 TVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNAC 100
           T  G +  S+FSL+S+  F  +  +   LLS+ G    +  C
Sbjct: 105 TALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGC 146


>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 69  LSCWLSASPMCMHSSNEMLLKK 134
           L CW+  +  CMHS  E+L K+
Sbjct: 603 LRCWMYLAADCMHSITELLGKE 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,041,461
Number of Sequences: 28952
Number of extensions: 151009
Number of successful extensions: 473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)