Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G15
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   5.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 576 AWPRSRLWFGWRGTFFILITG 514
           +W  S+LWF +   FFI+ITG
Sbjct: 215 SWIASKLWFRFFILFFIIITG 235


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 65  VLCWEH*VIFFSNCFSYRNYKY 130
           +L  +H  ++F NC  +RN+K+
Sbjct: 120 ILRMDHHCMWFKNCVGFRNHKF 141


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   NRXSDQRTSFKRGGRTSEMCKVLCWEH*VIFFSNCFSYRNYK 127
           N  SD  TS  + G++  + +V+     VIF +N +  R+Y+
Sbjct: 640 NPQSDDSTSSPKHGKSRSIDEVILSIKDVIFDNNLYKQRSYQ 681


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,469
Number of Sequences: 5004
Number of extensions: 48668
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)