Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G14
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    28   1.4  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    27   2.4  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   5.5  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   9.5  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 118 YYLSHKDSNMSDNNDEYYGDGAMEPLAAA 204
           Y   H  S  S ++D+Y+G G+ +P AAA
Sbjct: 378 YARDHFASQKSISSDQYFGRGSFDPEAAA 406


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 460 GIIXATMACIVSWLEGHSLAQTVFTNLYLHQPHSINNK 573
           G+I  T+ C+++ L+ H L      ++ L Q  S+++K
Sbjct: 291 GVIMPTLTCLLTHLKSHPLQSANPADVILEQLESLSSK 328


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 523 TVFTNLYLHQPHSINNKILKA 585
           ++F N+ +H+P  + NK+L +
Sbjct: 77  SIFVNICVHEPSKVKNKLLNS 97


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 102 MNFXVEFQFVLCLIPQ**LMFINEVGIF 19
           + F VEF F+ CLIP   +   ++VG+F
Sbjct: 50  LGFLVEF-FIFCLIPLFVIYVSSKVGVF 76


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 154 NNDEYYGDGAMEPLAAAPEVTYNWVDVTS 240
           ++  Y+GD A E  ++A    Y   D+TS
Sbjct: 158 DSSTYFGDSASETCSSASNSLYKQTDLTS 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,900
Number of Sequences: 5004
Number of extensions: 46489
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)