Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G14
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)               31   1.1  
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)                    29   4.4  
SB_4179| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)                 28   5.8  

>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
          Length = 131

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 175 HHNIHHYYRSYWNPCGINSKIINYHEFXSRISICTLSH 62
           HH+ HHY+  +  P  ++S   + +     ISI TL H
Sbjct: 63  HHHYHHYHHHHHPPSSLSSSASSANIIIIIISIITLHH 100


>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -3

Query: 292 HHEVTLLTADLLCI*RNQMLHRPSCRSLQEQQPEAPLLRHHNIHHYYRSYWNPCGINSKI 113
           HH  ++ ++    I  +Q    PS  SL        ++ HH  HH Y S  +   I + I
Sbjct: 434 HHHPSISSSSTNIIISHQYHRHPSISSLSIINI---IIIHHQYHH-YPSSISSLSIINII 489

Query: 112 INYHEFXSRISICTLSHSPIVIN 44
           I +H++    SI +LS +  +I+
Sbjct: 490 IIHHQYHHHPSISSLSINITIIH 512


>SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)
          Length = 368

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 550 DVGTD**KRSEQENVLPTRKQYMPLLHX*FQSVH 449
           D   D  +   +EN++P R Q  PL+H  FQ+ +
Sbjct: 245 DFNQDQSRTINRENIMPQRPQQRPLMHATFQNAN 278


>SB_4179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 166 IHHYYRS-YWNPCGINSKIINYHEFXSRISICTLSHSPI 53
           IHH Y+S +WN C  + K  N+ EF  ++ + TL  S I
Sbjct: 4   IHHRYQSSFWNQC-FHRKQFNFFEF-EKLLLYTLDMSGI 40


>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 517 QENVLPTRKQYMPLLHX*FQSVH 449
           +EN++P R Q  PL+H  FQ+ +
Sbjct: 295 RENIMPQRPQQRPLMHATFQNAN 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,588,609
Number of Sequences: 59808
Number of extensions: 326670
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)