Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G14
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferas...    41   6e-04
At5g61530.1 68418.m07720 small G protein family protein / RhoGAP...    29   3.6  
At5g51800.1 68418.m06423 expressed protein                             28   6.2  

>At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferase,
           Mak10 subunit family protein contains Pfam PF04112:
           Mak10 subunit, NatC N(alpha)-terminal acetyltransferase;
           similar to corneal wound healing related protein
           (GI:8926320) [Rattus norvegicus]; weak similarity to
           Glucose repressible protein MAK10 (Swiss-Prot:Q02197)
           [Saccharomyces cerevisiae]
          Length = 695

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +1

Query: 454 LIGIIXATMACIVSWLEGHSLAQTVFTNLYLHQPHSINNK-ILKAFC 591
           +I I+   +AC  +W  GHSLAQTVF+ +Y+ +P   +++ +L ++C
Sbjct: 109 IIDIMDHLLACEATWHMGHSLAQTVFSCIYVLRPERTSSQALLHSYC 155


>At5g61530.1 68418.m07720 small G protein family protein / RhoGAP
           family protein contains Pfam domain, PF00620: RhoGAP
           domain
          Length = 376

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 316 LQRVQKGVHHEVTLLTADLLCI*RNQMLHRPSCRSLQEQQPEAPLLRHHNIHHYYRSYW 140
           LQ++    ++ +  +TA LL + +  +L++    SL  +     + R  N    YR YW
Sbjct: 247 LQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYW 305


>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 226 PSCRSLQEQQPEAPLLRHHNIHHYYRSY 143
           P   SL  Q P   LL HH  HH+++S+
Sbjct: 20  PKDSSLDHQAPNPSLLHHH--HHHHQSF 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,954
Number of Sequences: 28952
Number of extensions: 228683
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)