Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G11
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    28   1.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.3  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    27   3.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   4.1  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   4.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   7.1  

>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 137 TKMLRSIYKVSGTVKNISTKVKFPEKFKGTIIEKWADYWKNLFID 271
           T +    YK++ +  N +     P KF    IE W+   K+LF+D
Sbjct: 463 TTLADPCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 227  IIEKWADYWKNLFIDYRQMLQDL 295
            +I+ W   W NLFI Y ++  DL
Sbjct: 1418 LIKTWNTTWNNLFIYYPELSNDL 1440


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 WTTGIITFYLLSRNNPTECD 394
           W+ G+I F LLS N+P+  D
Sbjct: 354 WSLGVIMFLLLSGNSPSFAD 373


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 213 FSGNFTLVLIFLTVPDTL*ILRNIFVVFIYYEEIPNVIQHILF 85
           F+     +L F  V D   I   IF VF+++ +IP  + H+ F
Sbjct: 5   FNVGILCLLRFKNVQDNKIIFEAIFEVFLHFLKIPVYMTHLGF 47


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 218 KGTIIEKWADYWKNLFIDYRQMLQDLRSDIQDDPMKAMK 334
           K   IEK  + ++N F +Y+Q+++ L    +D P K  K
Sbjct: 334 KSERIEKIHNAYENQFDEYKQIVKKLPKLKEDSPRKRQK 372


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 410 SSCL*NRILLDYFLIIDKRL*CQLSTSWLSLDHLVYHSLNLATFVD 273
           SSC+   I L   + ID+R   Q  T +L L    Y+SL+ +   D
Sbjct: 199 SSCVICSIRLANLVYIDRRQSSQQITDYLDLSLQTYYSLDKSNVPD 244


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 591 WALYRSQELLNSEVYITDKIPK 526
           WA Y S    N +VY++ K P+
Sbjct: 335 WAYYNSMTQYNLDVYLSSKAPQ 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,697
Number of Sequences: 5004
Number of extensions: 55510
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)