Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G11
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53...    30   1.8  
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888...    28   7.4  
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    27   9.7  
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870...    27   9.7  

>01_01_0069 +
           536787-537068,537193-537493,537528-537581,538848-539241,
           539345-539595,539678-539798,539893-540133,540341-540445,
           540571-540615,540738-540890,541132-541410,541705-541841,
           541975-542017,542228-542329
          Length = 835

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 197 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 298
           VKF ++F+G ++ +W    K+ F+DY  + +DL+
Sbjct: 2   VKFSKQFEGQLVPEW----KHAFVDYSLLKKDLK 31


>08_02_0907 -
           22485714-22486859,22487836-22487882,22488456-22488830,
           22489339-22489500,22490325-22490439
          Length = 614

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 570 PVTYTGPIVPTRNQHISVSPPVS 638
           P +Y GP  P+ + HI++ PP S
Sbjct: 390 PFSYQGPPPPSMHNHINLLPPTS 412


>05_03_0460 -
           14294931-14295110,14295200-14295234,14295358-14295457,
           14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 195 K*NSQKNLKEQLLKNGLITGR-TYLLIIDKCCKI*GVIYKMI 317
           K +  + + E++L+ GL     TY L+ID CCK  G I K I
Sbjct: 630 KLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKT-GRIEKAI 670


>04_03_0397 -
           15362353-15363383,15385301-15385910,15386890-15387096,
           15388287-15388313,15388397-15388471
          Length = 649

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 AMKWTTGIITFYLLSRNNPTECDFKDNLKI-INNEXGLXSEECLNPKAVEHL 478
           AMKW +G +      R +    +FK+ L I  NN   L  E   NP +++HL
Sbjct: 490 AMKWMSGTL------RCSINRHEFKELLHIRFNNGDDLHDEHTYNPFSIDHL 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,889
Number of Sequences: 37544
Number of extensions: 295377
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)