Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G11
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam...    33   0.22 
At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    28   4.7  
At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR) domai...    28   6.1  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    28   6.1  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    27   8.1  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    27   8.1  
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa...    27   8.1  
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa...    27   8.1  
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    27   8.1  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    27   8.1  

>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 784

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +2

Query: 197 VKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLR 298
           VKF ++F+G ++ +W    K+ F+DY Q+ +DL+
Sbjct: 2   VKFTKQFEGQLVPEW----KDAFVDYSQLKKDLK 31


>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 183 FLTVPDTL*ILRNIFVVFIYYEEIPNVIQHILF 85
           +L  PD + +L   +++++ +EE PN +Q  LF
Sbjct: 234 YLPGPDDMLVLDISYMIYMKFEEYPNALQIALF 266


>At5g44910.1 68418.m05506 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 254 KNLFIDYRQMLQDLRSDIQDDPMKAMKWTTGIITFYLLSRNNPTECDFKDNLKII 418
           KNL  ++    ++LR    +DP+K +KW   + +  ++ R   T  D    L ++
Sbjct: 111 KNLEDEFGNHFEELREKYANDPLKILKWEDSLSS--IVERTGLTSEDHGTGLGLV 163


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 368 SRNNPTECDFKDNLKIINNEXGLXSEECLNPKAVEHLR 481
           SR NP   DF+  L+ +NN   L +++ +N  +VEH++
Sbjct: 409 SRCNPGSNDFEYRLESVNNVHRLSNQD-VNNASVEHVK 445


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 183 FLTVPDTL*ILRNIFVVFIYYEEIPNVIQHILF 85
           +L  PD + +L   ++++I + E PN +Q  LF
Sbjct: 260 YLPGPDDMLVLDIAYMIYIKFAEYPNALQIALF 292


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = +2

Query: 131 KTTKMLRSIYKVSGTVKNISTKVKFPEKFKGTIIEKWADYWKNLFIDYRQMLQDLRSDIQ 310
           +T K   S+Y +S  ++    K+  PE+  G  + +  ++ KN+    +  L+D R  ++
Sbjct: 131 ETDKSEESVY-LSDILREYKGKLYVPEQVFGPELSEEEEFEKNVKDLPKMSLEDFRKAME 189

Query: 311 DDPMKAM 331
           +D +K +
Sbjct: 190 NDKVKLL 196


>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 194 KVKFPEKFKGTIIEKWADYW 253
           K+K    F  T +EKW DYW
Sbjct: 118 KLKCGHLFHKTCLEKWIDYW 137


>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 162

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 194 KVKFPEKFKGTIIEKWADYW 253
           K+K    F  T +EKW DYW
Sbjct: 118 KLKCGHLFHKTCLEKWIDYW 137


>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -2

Query: 306 ISLLKSCNICR*SINKFFQ*SAHFSIIVPLNFSGNFTLVLIFLTVPDTL*ILRNIFVVFI 127
           ++LL  C+IC   +   F  +  F+  +P     NFT+ +  L     + +L+N   + I
Sbjct: 36  LTLLLLCSICFLFLTLNFPFTIEFTASIPRTCDHNFTVYVYDLPKEFNIGLLQNCRHLNI 95

Query: 126 YYEEIPNV 103
           Y    P+V
Sbjct: 96  YTNMCPHV 103


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 540 LLCIPQN*AIPVTYTGPIVPTRNQHISVSPPVSLI 644
           L CI QN A+ VTY   + P ++ HIS  P  ++I
Sbjct: 676 LPCIEQNRALNVTY---LCPAKHSHISEPPRGAII 707


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,601
Number of Sequences: 28952
Number of extensions: 266368
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)