Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_G10
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0483 + 3437707-3438342 31 1.1
02_04_0109 + 19812544-19814474,19814574-19814607 31 1.1
03_06_0423 + 33822904-33823545 29 3.2
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 29 4.3
02_05_1092 - 34049640-34049934,34050013-34050147,34050229-340503... 28 5.6
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 28 7.5
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441... 27 9.9
02_02_0460 + 10518598-10518629,10519751-10519921,10521817-105219... 27 9.9
>06_01_0483 + 3437707-3438342
Length = 211
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -2
Query: 620 EVKSQEVLEAPQVQRGERAGRRVLE--GQALEDGDVEGSESVRQRVGSDAAPSKRHVEXA 447
+V+ + + E + G R+G RV E G+A V G+ S+ + V + S+R +E
Sbjct: 12 QVQLRSLEEEEEAAAGGRSGARVAEQEGEAFSWVIVGGAHSLEEEVAPVVSESERGMEEE 71
Query: 446 RAAVE 432
AAV+
Sbjct: 72 EAAVD 76
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 593 APQVQRGERAGRRVLEGQALE---DGDVEGSESVRQRVGSDAAPSKRHVEXARAAVERRH 423
+P V +++ LE ++ E DGDVE + VR+ VG D KR+ + A H
Sbjct: 119 SPDVAPEQKSSDGALEKKSDEKKSDGDVEDLKDVRETVGQDPVEMKRNEDVTSDANVIEH 178
Query: 422 PR 417
R
Sbjct: 179 DR 180
>03_06_0423 + 33822904-33823545
Length = 213
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 212 AADGAVCVVAASRCAGSAARVRPGPGLRR 298
A D + A RCAG+ A V P P LRR
Sbjct: 55 AHDDSALFAADDRCAGAVAVVEPPPPLRR 83
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 28.7 bits (61), Expect = 4.3
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Frame = -2
Query: 653 LDXERHAXGPXEVKSQEVLEAPQVQRGERAGRRVLEGQALEDGDV----EGSESVRQRVG 486
L+ RH + QE EA V+ R R ++ +GDV E +E + +
Sbjct: 146 LEDARHLAQRYDRMRQEA-EAQAVEVSRRQNR---VRESAPNGDVITKLEAAEYKLEELK 201
Query: 485 SDAAPSKRHVEXARAAVERRHPR-TAQR---HALGTLQLHILSLREVYX*VLTV--HSEE 324
S + A AAVE + R T QR L +L L + + R + VL + H E+
Sbjct: 202 SSMVGLGKEAVAAMAAVEAQQQRLTLQRLIAMLLISLALKVEAERAYHQRVLEILDHLEQ 261
Query: 323 ELIVEMVSRDAVPGPAA 273
E++ E +A P P+A
Sbjct: 262 EMVSERQKIEAPPTPSA 278
>02_05_1092 -
34049640-34049934,34050013-34050147,34050229-34050305,
34050541-34050624,34050699-34050849,34050944-34051060,
34051162-34051219,34051412-34051502,34051601-34051648,
34051724-34051792,34051881-34051904,34052125-34052233,
34052338-34052375,34052524-34052672,34052765-34052780
Length = 486
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -2
Query: 605 EVLEAPQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVE 453
+V+EAP+++ + AG V G+A D+E E R+ + DA +KR +E
Sbjct: 310 QVVEAPELKEIQEAGSSVAGGEA-HKFDIEDPEPPRKSMRIDA--NKRKLE 357
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 33 CAATRXVFLIIFLELVFA*K*CKNRDNSDNVIDSSVEFLC 152
C++T VFLIIF L C+ R+ S+ F C
Sbjct: 135 CSSTSSVFLIIFYPLYLVFSCCQPREWSEQQASEEGMFFC 174
>06_02_0061 -
11043183-11043417,11043556-11043796,11043923-11044106,
11044228-11044437,11045135-11045423,11045787-11045923,
11046019-11046137,11046405-11046518,11046710-11046803
Length = 540
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = -2
Query: 542 QALEDGDVEGSESVRQRVGSDAA 474
+A+E G ++GS SV++++ +DAA
Sbjct: 491 EAVEAGAIDGSRSVKRKIEADAA 513
>02_02_0460 +
10518598-10518629,10519751-10519921,10521817-10521940,
10523596-10523640
Length = 123
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 479 AAPSKRHVEXARAAVERRHPRTA 411
AA KRH + AVE +HPR A
Sbjct: 37 AAEHKRHEQIGNLAVELKHPRLA 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,705
Number of Sequences: 37544
Number of extensions: 217822
Number of successful extensions: 1164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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