Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_G10
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.13
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 28 6.7
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 28 6.7
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 28 6.7
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 28 6.7
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 28 6.7
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 28 6.7
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 28 6.7
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -2
Query: 596 EAPQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPS-KRHVEXARAAVERRHP 420
E P Q + RR E + ED D + V V +DA+ S R+ R RR
Sbjct: 376 ETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGNRRGS 435
Query: 419 RTAQRHALG 393
R Q+ G
Sbjct: 436 RRGQKRTSG 444
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 248 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 307
Query: 301 P 299
P
Sbjct: 308 P 308
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 248 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 307
Query: 301 P 299
P
Sbjct: 308 P 308
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 283 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 342
Query: 301 P 299
P
Sbjct: 343 P 343
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 283 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 342
Query: 301 P 299
P
Sbjct: 343 P 343
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 283 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 342
Query: 301 P 299
P
Sbjct: 343 P 343
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 248 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 307
Query: 301 P 299
P
Sbjct: 308 P 308
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 481 MLHLRSVTLXTRAPPSNDGIPAPPSATPSGHSSSTY*ASEKFIXRF*PCTVKKNSSLRWC 302
M S+ + + P++DG+P P G S+T + I +F P +S+ C
Sbjct: 283 MSETESIIMFSGGMPTDDGLPMPALTILKGGKSATVLEMDWPIIQFIPLNQNIWNSIPQC 342
Query: 301 P 299
P
Sbjct: 343 P 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,746,405
Number of Sequences: 27780
Number of extensions: 148698
Number of successful extensions: 565
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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