Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G09
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9TM11 Cluster: Putative uncharacterized protein menA; ...    35   1.5  
UniRef50_Q54R74 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  

>UniRef50_Q9TM11 Cluster: Putative uncharacterized protein menA;
           n=1; Cyanidium caldarium|Rep: Putative uncharacterized
           protein menA - Cyanidium caldarium
          Length = 306

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -2

Query: 303 YFNKISRRLFEYFLVQILISPSGGTLSYLYFSTPSFLLAIIILYSNGPGVAPPLGL 136
           ++  +S  L  + L+ +L+S   G++ ++ FS  S  L I  +YS GP     LGL
Sbjct: 96  FYLSVSLLLITFILILLLLSVDYGSIKHIIFSLMSSGLFICFVYSGGPFPLASLGL 151


>UniRef50_Q54R74 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1135

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -1

Query: 469 FQSLSKLLSIRKYFCKSSKDVVRLLKKAIQTSKQRQEPFSIYLNKAAGIITMNII 305
           +Q+ S+  S++ Y     KDVV +L KAI     +Q    +Y N+   +I  NII
Sbjct: 620 YQNPSQATSLQ-YTLTGLKDVVSVLDKAIHVDNAKQRLIDVYRNEMEEMIDKNII 673


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,787,055
Number of Sequences: 1657284
Number of extensions: 11710360
Number of successful extensions: 25701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25691
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)