Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G09
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    28   1.0  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   3.1  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   4.1  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   7.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   9.5  

>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 406 VRLLKKAIQTSKQRQEPFSIYLNKAAGIITMNIILF*QNFKTAFRVFSCT 257
           V L K  +Q +K  QEP   Y     GI TMN++L   +  T   V   T
Sbjct: 343 VCLGKILVQINKVTQEPTLHYHKLPRGIATMNVVLMASHLTTHADVLMAT 392


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 282 RLFEYFLVQILISPSGGTLSYLYFSTPSFLLAIIILY 172
           +LF  + V    S  GGT++Y+ F   S L+  +++Y
Sbjct: 157 KLFHIYSVNWCPSKLGGTITYILFWMFSLLVGSLVVY 193


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 270 YFLVQILISPSGGTLSYLYFSTPSFLLAIIILY 172
           +FL  + ISPS      + F+ P FL+ +  ++
Sbjct: 302 FFLSSLFISPSNKESLVILFAAPVFLITLFAMF 334


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 469 FQSLSKLLSIRKYFCKSSKDVVRLLKKAIQTSKQRQEPFSIYLNKAAGIIT 317
           F S+S   + R +  +++   +  + +A +T  Q  + F++  NK+ GI+T
Sbjct: 371 FASVSHDNTCRVWDVRATSGSIYTISRAEKTGSQWDKLFAVDWNKSIGIVT 421


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 285 RRLFEYFLVQILISPSGGTLSYLYFSTPSFLLAIIILYS 169
           R +F      + +S   GT+ + Y S P    ++IILYS
Sbjct: 71  RGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYS 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,702
Number of Sequences: 5004
Number of extensions: 49652
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)