Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G09
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0816 + 20789399-20789728,20790098-20790420,20791437-207915...    29   2.4  
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   4.2  
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48...    29   4.2  
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861     27   9.8  
08_01_1041 - 10555029-10555329,10558055-10558236                       27   9.8  

>10_08_0816 +
           20789399-20789728,20790098-20790420,20791437-20791584,
           20791679-20791711,20791879-20791950
          Length = 301

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 350 YIPKQSGRNNHDEYNFILTKFQDGFSSIFLY 258
           YIP   G   HD ++++  + Q  F+S+F Y
Sbjct: 228 YIPFYGGAEYHDYHHYVGRQSQSNFASVFTY 258


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 493 SIVNFKMAMMXTIDXXSHKSEIQLKLLLRL*TFEVQSLHVLD 618
           S+ + K+++   +     K E+ L  L +L ++++QSLH++D
Sbjct: 603 SLRDLKISLSDKLSKCKTKEEMLLASLCKLSSYKLQSLHIID 644


>03_01_0058 -
           478708-478731,478802-478834,478953-479100,479423-480072
          Length = 284

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 350 YIPKQSGRNNHDEYNFILTKFQDGFSSIFLY 258
           YIP   G   HD ++F+    Q  FSS+F +
Sbjct: 227 YIPLYGGVEYHDYHHFVGGHSQSNFSSVFTF 257


>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
          Length = 158

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 KRKESKGRRHPGPIGIQNNNRQKKRRGGKI*IAQRTPGRR 246
           K +E  GRR  G    +   ++K+RRGG     +R  GRR
Sbjct: 23  KEEEEAGRRKAGEEARRGAGKRKRRRGG----GRRAAGRR 58



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 KRKESKGRRHPGPIGIQNNNRQKKRRGGKI*IAQRTPGRR 246
           K +E  GRR  G    +   ++K+RRGG     +R  GRR
Sbjct: 59  KEEEEAGRRKAGEEARRGAGKRKRRRGG----GRRAAGRR 94


>08_01_1041 - 10555029-10555329,10558055-10558236
          Length = 160

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 193 KKRRGGKI*IAQRTPGRRY*NLYKKILEKP 282
           ++RRG ++ +A RTP  ++ NL   ++E P
Sbjct: 55  QRRRGLRVSVAARTPAHQFRNLDAILMESP 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,833,106
Number of Sequences: 37544
Number of extensions: 306856
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)