Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G09
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5216| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.62 
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    29   2.5  
SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)                     29   4.3  
SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)             28   7.6  
SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_5216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 316 MNIILF*QNFKTAFRVFSCTNFNIAVRGYAELFIFFHPVVSFGDYYS 176
           M+I     NF+  F   SC N++I+V+ Y E F FF  ++  G   S
Sbjct: 159 MSITFSQPNFRLPFLARSCYNWSISVQTYGESFHFFFFLMEKGKQLS 205


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 149 GATPGPLEYRIIIAKRNDGVEKYK*LSVPPDGDI 250
           G TP P E  + + K  D  E Y  +  PPDG +
Sbjct: 177 GVTPMPKEMALHVPKGGDWSELYDHIKFPPDGQL 210


>SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)
          Length = 358

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 403 RLLKKAIQTSKQRQEPFSIYLNK 335
           R+LKKA +T KQR E F+ YL++
Sbjct: 81  RILKKAEKTHKQRVEKFNEYLDE 103


>SB_59502| Best HMM Match : Arg_repressor (HMM E-Value=1.2)
          Length = 277

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 95  LXLSQDGLKKQKGKSPRGGATPGPLEYRIIIAKRNDGVEKYK 220
           L  + +   KQ G+   G    GPL+YRI   +    +EK K
Sbjct: 220 LNATNEAQPKQNGRIDHGNYREGPLDYRISEEEIIKAIEKLK 261


>SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 276 FEYFLVQILISPSGGTLSYLYFSTPSFLLAIIILY 172
           F   + +I I P+GG + Y   S P FL+ I+ LY
Sbjct: 12  FVQLVREIGIIPNGGRIYYKNRSQPPFLIPIVDLY 46


>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 398 FEKGNSNIQTEARAF*YIPKQSGRNNHDEYNFILTKFQDGFSSIF 264
           F  GN+    +AR+F  +  +   ++  E+N+      +G S IF
Sbjct: 113 FVPGNAGSFKQARSFASVALKKAEDSRYEFNYFTVDLDEGLSGIF 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,727,590
Number of Sequences: 59808
Number of extensions: 363621
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)