Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G09
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    30   1.5  
At4g22756.1 68417.m03285 sterol desaturase family protein simila...    29   2.7  
At4g12110.1 68417.m01923 sterol desaturase family protein simila...    29   2.7  
At5g37500.1 68418.m04516 guard cell outward rectifying K+ channe...    27   8.2  

>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           protein
          Length = 1143

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 306 FYFNKISRRLFEYFLVQILISPSG--GTLSYLYFSTPSFLLAIIILYSNGPGVAP 148
           F  N  S  L    L  + +S SG  GTL   +FS  S L++I + Y+N  G  P
Sbjct: 115 FVLNSTSLLLLPLTLTHLELSSSGLIGTLPENFFSKYSNLISITLSYNNFTGKLP 169


>At4g22756.1 68417.m03285 sterol desaturase family protein similar
           to sterol 4-alpha-methyl-oxidase GI:16973471 from
           [Arabidopsis thaliana]; contains Pfam profile PF01598:
           Sterol desaturase
          Length = 299

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 350 YIPKQSGRNNHDEYNFILTKFQDGFSSIFLY 258
           YIP   G   HD ++++  + Q  F+S+F Y
Sbjct: 230 YIPFYGGAEYHDYHHYVGGQSQSNFASVFTY 260


>At4g12110.1 68417.m01923 sterol desaturase family protein similar
           to sterol 4-alpha-methyl-oxidase GI:16973471 from
           [Arabidopsis thaliana]; contains Pfam profile PF01598:
           Sterol desaturase
          Length = 298

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 350 YIPKQSGRNNHDEYNFILTKFQDGFSSIFLY 258
           YIP   G   HD ++++  + Q  F+S+F Y
Sbjct: 230 YIPFYGGAEYHDYHHYVGGQSQSNFASVFTY 260


>At5g37500.1 68418.m04516 guard cell outward rectifying K+ channel
           (GORK) identical to guard cell outward rectifying K+
           channel [Arabidopsis thaliana] gi|11414742|emb|CAC17380;
           member of the 1 pore, 6 transmembrane (1P/6TM) Shaker K+
           channel family, PMID:11500563
          Length = 820

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 303 YFNKISRRLFE-YFLVQILISPSGGTLSYLYFSTPSFLLAII 181
           + N+I  RL E YFL   +I+  G  + +LYF     L A++
Sbjct: 394 FINQIVIRLHEEYFLPGEVITEQGNVVDHLYFVCEGLLEALV 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,031,576
Number of Sequences: 28952
Number of extensions: 256544
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)