Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G05
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     31   1.1  
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780...    29   3.2  
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    27   9.8  

>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 345 VKMELEKELTKKF-LCGEMSFADYSNEWYYNDDE 443
           V+++LE+++TKK  +C E +   +SN W Y   E
Sbjct: 126 VQLKLERKITKKCGMCHERNQGSFSNPWAYASSE 159


>05_07_0339 -
           29375424-29377166,29377272-29377441,29377888-29378030,
           29378363-29378478,29378576-29378814,29378909-29379110,
           29379212-29379430,29379657-29379724,29379806-29379812,
           29380404-29380616
          Length = 1039

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 196 ILFPTNRITESDSQIGYTVSLSSYNVVITCS 104
           IL PTNR T  + + GY V  +S   V+T S
Sbjct: 299 ILTPTNRSTLGNRRFGYLVKRTSNTAVVTVS 329


>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 642 YLVTHLLGSFFISSSKAQVSFAHKTPGVQEAD 547
           Y   HL+  F +  S  Q  F  K PGV+  +
Sbjct: 165 YSYHHLINGFAVHMSPLQAEFLRKAPGVKHVE 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,652
Number of Sequences: 37544
Number of extensions: 176318
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)