Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G05
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)                  30   1.4  
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)          30   1.9  

>SB_41471| Best HMM Match : Cupin_4 (HMM E-Value=0.31)
          Length = 406

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query: 478 NMXKDISLPHPKIN-INKEGGV-SLICLLHSWGLMGEA-NLRFARGDKETAEQMCHEIIK 648
           N  K ++L H +I  + +   V +LI  LHS GL   A +L  A   KETAEQ   +I+K
Sbjct: 245 NKTKVVNLLHFEIRKLERAHEVHNLILELHSLGLQEVAQSLTHALSSKETAEQELRDILK 304

Query: 649 Q 651
           +
Sbjct: 305 R 305


>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
          Length = 858

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 423 WYYNDDEXGE-NVXIDKXYEYEXGHQSTTSKDKHQQRRRRFTHLPPAL 563
           W +ND + G     +D  Y+YE   Q T   +  ++ RRR T + P L
Sbjct: 149 WMHNDLQVGLLGTQVDLTYDYEIAGQ-TLPYETQEEIRRRMTEIAPNL 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,279
Number of Sequences: 59808
Number of extensions: 224594
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)