Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G03
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   192   3e-50
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   192   3e-50
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.1  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   5.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  192 bits (469), Expect = 3e-50
 Identities = 90/164 (54%), Positives = 118/164 (71%)
 Frame = -1

Query: 577 MPPKFDPNEIKIVNLXCVGGEVGATSSLAPKXGPLGLSXKKVGDDIAKATSDWKGXKITV 398
           MPPKFDPNE+K + +  VGGEV   S+LAPK GPLGLS KKVG+DIAKAT DWKG ++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 397 QLTVQNXXXXXXXXXXXXXXXXXXLKEPPRDRKKQXNIKHNGNXSLEDVIGIAKIMRNRS 218
           +LT+QN                  LKEP RDRKK  N+ H+GN SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 217 MARYLXGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 86
           +A+ L G+VKEILGTA SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  192 bits (469), Expect = 3e-50
 Identities = 90/164 (54%), Positives = 118/164 (71%)
 Frame = -1

Query: 577 MPPKFDPNEIKIVNLXCVGGEVGATSSLAPKXGPLGLSXKKVGDDIAKATSDWKGXKITV 398
           MPPKFDPNE+K + +  VGGEV   S+LAPK GPLGLS KKVG+DIAKAT DWKG ++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 397 QLTVQNXXXXXXXXXXXXXXXXXXLKEPPRDRKKQXNIKHNGNXSLEDVIGIAKIMRNRS 218
           +LT+QN                  LKEP RDRKK  N+ H+GN SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 217 MARYLXGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 86
           +A+ L G+VKEILGTA SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 144 PSTVHPTDCAVPRISFTEPXRYRAIDLFLMIFAMPITSSRXMLPLCLIFXCF 299
           P+  +P   + PR   T   R   + + +     P TSSR  LPL +++  F
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHF 264


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 77  KHLFINGQSSAVDVINKIMWRPALHSTS 160
           K ++++ ++ A+D++NK M   A+ STS
Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 281 TQRQHXP*RCNRHCEDHEKQINGPVPXWLSKRD 183
           T+  H P +   HC  H  + + PVP   +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,830
Number of Sequences: 5004
Number of extensions: 41217
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)