Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G03
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             231   5e-61
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       29   4.3  
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      28   5.7  
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  231 bits (564), Expect = 5e-61
 Identities = 110/164 (67%), Positives = 124/164 (75%)
 Frame = -1

Query: 577 MPPKFDPNEIKIVNLXCVGGEVGATSSLAPKXGPLGLSXKKVGDDIAKATSDWKGXKITV 398
           MPPKFDPNEI+ V L C GGEVGAT+SLAPK GPLGLS KKVGDDIAKAT DWKG KITV
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 397 QLTVQNXXXXXXXXXXXXXXXXXXLKEPPRDRKKQXNIKHNGNXSLEDVIGIAKIMRNRS 218
            LT+QN                  LKEPPRDRKK  NIKHNGN +L+DV  +AK+MR RS
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRS 120

Query: 217 MARYLXGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 86
           MAR+L G+VKEILGT QSVGCTV+G  PHD+ID INSG + I++
Sbjct: 121 MARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 250 IGIAKIMRNRSMARYLXGS-VKEILGTAQSVGCTVEGRPP 134
           +G  K++++R       G  V+ + GT  S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167


>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 414 PFQSLVALAMSS--PTFLXDRPRGPILGAKDDVAPTSP 521
           PF +L+    SS    F+ DRPRGP  G  D +    P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397


>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 175 TAQSVGCTVEGRPPHDLIDDINSG 104
           T   + C VE  PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173


>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 481 GPLGLSXKKVGDDIAKATSDWKG 413
           GPLG+  +++ D    ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,097,437
Number of Sequences: 59808
Number of extensions: 338389
Number of successful extensions: 647
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)