Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G03
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   189   2e-48
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   182   2e-46
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           180   6e-46
At5g28190.1 68418.m03413 hypothetical protein                          27   8.2  
At4g31260.1 68417.m04437 hypothetical protein                          27   8.2  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  189 bits (460), Expect = 2e-48
 Identities = 96/163 (58%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
 Frame = -1

Query: 577 MPPKFDPNEIKIVNLXCVGGEVGATSSLAPKXGPLGLSXKKVGDDIAKATS-DWKGXKIT 401
           MPPK DP++I  V +   GGEVGA SSLAPK GPLGL+ KK+G+DIAK T+ +WKG ++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 400 VQLTVQNXXXXXXXXXXXXXXXXXXLKEPPRDRKKQXNIKHNGNXSLEDVIGIAKIMRNR 221
           V+LTVQN                  LKEP RDRKK  NIKHNGN S +DVI IAKIMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 220 SMARYLXGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 92
           S+A+ L G+VKEILGT  SVGCTV+G+ P DL ++INSG + I
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  182 bits (442), Expect = 2e-46
 Identities = 92/165 (55%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
 Frame = -1

Query: 577 MPPKFDPNEIKIVNLXCVGGEVGATSSLAPKXGPLGLSXKKVGDDIAKATS-DWKGXKIT 401
           MPPK DP++I  V +   GGEVGA SSLAPK GPLGL+ KK+G+DIAK T+ +WKG ++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 400 VQLTVQNXXXXXXXXXXXXXXXXXXLKEPPRDRKKQXNIKHNGNXSLEDVIGIAKIMRNR 221
           V+LTVQN                  LKEP RDRKK  NIKHNGN S +DV  IA+IMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 220 SMARYLXGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 86
           S+A+ L G+V+EILGT  SVGCTV+G+ P DL  +I  G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  180 bits (439), Expect = 6e-46
 Identities = 91/165 (55%), Positives = 113/165 (68%), Gaps = 1/165 (0%)
 Frame = -1

Query: 577 MPPKFDPNEIKIVNLXCVGGEVGATSSLAPKXGPLGLSXKKVGDDIAKATS-DWKGXKIT 401
           MPPK DP++I  V +   GGEVGA SSLAPK GPLGL+ KK+G+DIAK T+ +WKG ++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 400 VQLTVQNXXXXXXXXXXXXXXXXXXLKEPPRDRKKQXNIKHNGNXSLEDVIGIAKIMRNR 221
           V+LTVQN                  LKEP RDRKK  NIKHNGN S +DV  IA+IMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 220 SMARYLXGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 86
           S+A+ L G+V+EILGT  SVGCTV+G+ P D+  +I  G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165


>At5g28190.1 68418.m03413 hypothetical protein
          Length = 839

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +2

Query: 368 LGLSVLNCQLHSDLXTLP-VTCGLGNVITHLFXRQTKRTXFRGQR*CGTDFPADTSQIHD 544
           L L  L+  ++S   TLP +T G+   I   F   +KR     ++ C  +F    S + +
Sbjct: 619 LKLHALSLDINSSSHTLPKITHGMFKKIWLCFLGDSKRWE---EKCCWAEFANTFSYVSE 675

Query: 545 ----FNFIWVKLRGHFVDYLXQLYTIITLNPNGW 634
               FN I +K+RG    Y  +    +    N W
Sbjct: 676 HVNVFNTILIKIRGGIFSYRGKTTNAMGFWNNQW 709


>At4g31260.1 68417.m04437 hypothetical protein 
          Length = 63

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 72  IXNIYSSMVKAPLLMSSIRSCGGLPSTV 155
           I ++Y   VK+ + +  IRSCGG+ ++V
Sbjct: 28  IRSLYPDKVKSEIPIQDIRSCGGVLASV 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,006
Number of Sequences: 28952
Number of extensions: 228943
Number of successful extensions: 461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)