Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_G02
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_55345| Best HMM Match : Laminin_G_2 (HMM E-Value=2e-31)             28   7.6  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.6  

>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 188 CKLY*TCVSQNTGTCPESSCACPETSC 268
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


>SB_55345| Best HMM Match : Laminin_G_2 (HMM E-Value=2e-31)
          Length = 189

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 2   ESTTRWQHWTIVATLSPSFVTMPPKKQPEKSGSSGXQTRGKETGNSQN 145
           +  T +Q +T+V T   S  T+    QP + GSS    +GK TG + N
Sbjct: 105 QQLTLYQWYTVVLTRQESEGTLQVDSQPVRRGSS----KGKSTGLNLN 148


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 2   ESTTRWQHWTIVATLSPSFVTMPPKKQPEKSGSSGXQTRGKETGNSQN 145
           +  T +Q +T+V T   S  T+    QP + GSS    +GK TG + N
Sbjct: 114 QQLTLYQWYTVVLTRQESEGTLQVDSQPVRRGSS----KGKSTGLNLN 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,120,765
Number of Sequences: 59808
Number of extensions: 91034
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)