Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_F24
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   185   6e-48
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.0  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   1.8  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    27   3.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.2  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  185 bits (450), Expect = 6e-48
 Identities = 89/135 (65%), Positives = 108/135 (80%)
 Frame = +3

Query: 246 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 425
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 426 TLHPAVHAGILXRLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 605
           TLHPAVH GIL R   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 606 GGVTLLRAAAKNHDR 650
           GGVTLLRAAAKNH R
Sbjct: 123 GGVTLLRAAAKNHAR 137


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 362 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 454
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 616 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 521
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 169 PPVNPSSSQLHSSA*ANRTWRQMEN*LFS 255
           P V+  + +LH  A ++RTW +M + LF+
Sbjct: 101 PAVDKIAKRLHDQAPSDRTWSRMVSNLFA 129


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 103 ISKLRNPWHEVKNISDYNNRLSPPVNPSSSQLHSSA*ANRTW 228
           I+KL  P HE++ + DY+N  +   +    Q ++   A  TW
Sbjct: 47  IAKLSVPPHEMRVVDDYSNSKNAERHSGEIQAYAKF-AGSTW 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,316
Number of Sequences: 5004
Number of extensions: 43921
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)