Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_F24
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 130 1e-30
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 31 1.1
10_08_0415 - 17761594-17762382 29 2.4
11_02_0149 - 8801675-8804332 29 3.2
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 5.6
09_04_0652 - 19227686-19227926,19229368-19232294 28 7.4
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 28 7.4
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 28 7.4
03_01_0112 + 902459-902770,903275-903280 28 7.4
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 27 9.8
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325 27 9.8
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 130 bits (313), Expect = 1e-30
Identities = 67/136 (49%), Positives = 84/136 (61%), Gaps = 1/136 (0%)
Frame = +3
Query: 240 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 419
K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 420 VKTLHPAVHAGILXRLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVEN 596
VKTLHP+VH GIL R + + VVV NLYPF V+ ++ D +EN
Sbjct: 106 VKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGIEN 165
Query: 597 IDIGGVTLLRAAAKNH 644
IDIGG T++RAAAKNH
Sbjct: 166 IDIGGPTMIRAAAKNH 181
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Frame = +3
Query: 279 LSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI- 455
L LA+ L C + +I G + + V D+ E G KT +V A +
Sbjct: 316 LQLAEDLDACPVWVINDGASLNEQIPSATIAAFVKDVVDGIEFARGDPKTTWGSVRAAMG 375
Query: 456 ------LXRLSDSDQEDMK---RQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 605
L +S +QE K ++KY + YP ++ +S D++ AV D+
Sbjct: 376 HPEPFPLYYISVGNQECSKPYYKEKYVKFYSAIKASYPDIKIISSCDISSISAVNPADL 434
>10_08_0415 - 17761594-17762382
Length = 262
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 329 WRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLXSIIR 472
WRY+ A R +S C G + + GE + +G C D+ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>11_02_0149 - 8801675-8804332
Length = 885
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 213 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 320
S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -3
Query: 599 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 519
DVL +R GHV L Y L E DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 350 SERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 451
SE+ P S C S + ++G + GTCW
Sbjct: 447 SEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 346 AVAVPPLAINCRPHSDRLFANESRPVLSETLRRASF 239
AV PP+A CRPH RL + V + L R+ +
Sbjct: 20 AVLHPPVASACRPHPPRLIRCGAAAVPDDELLRSLY 55
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/74 (29%), Positives = 27/74 (36%)
Frame = +2
Query: 248 SSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGEN 427
S R DG + V PA+ RH R SSR GH + GD SG
Sbjct: 707 SPSRDSHDGEKTATS--VHSTPALSPMGSPRHSVG-RDSSSSRFSGHPKRKGDKSSSGRK 763
Query: 428 FTSSGTCWDLXSII 469
+G W +I
Sbjct: 764 GAPAGKGWQEIGVI 777
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 416 TSEHLRCSRDVRHILNCEAGVPK 348
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 360 RRSEAPWRYRHWQSTAGHIPTGS 292
RR PW++ HWQ+ G + + S
Sbjct: 20 RRPVHPWQWHHWQNLLGLLSSSS 42
>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
Length = 321
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 649 RSWFLAAARRRVTPPMSMFSTASATV-TSGLDTVWT 545
R WF AAAR R P +F A T S + WT
Sbjct: 21 RRWFAAAARDRKPAPRPLFGGADTTPHGSSVTEPWT 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,004
Number of Sequences: 37544
Number of extensions: 322280
Number of successful extensions: 1061
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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